Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31263
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   3.6  
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom...    25   6.2  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    25   8.3  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 575 ASITTVVNIGVQIKHLIHSIFKKVYLKTNHKKINRNLK 462
           A+ T   N+G +   + H + KKVY K + ++I  NL+
Sbjct: 692 ANWTLPSNLGGKSVSIYHKVIKKVYGKEHAQQIIENLQ 729


>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 4   LDRYIMK-TTQVAQYALRLTYSQQANREKMMTRSALLLATIG 126
           LD +I K TT+    ALR  Y+Q+AN  ++ +    +L  IG
Sbjct: 188 LDDWIAKATTEEGLNALREKYTQEANTLRIESFGVEILHAIG 229


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 294 WMHSGVFFFQKTFCFCI 244
           W+++ +FF  + FCF I
Sbjct: 345 WVYACIFFLTRVFCFLI 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,732
Number of Sequences: 5004
Number of extensions: 46843
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)