Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31262
         (459 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q95ZG3 Cluster: Spindle pole body component 97; n=2; Di...    33   3.0  
UniRef50_A2DQE5 Cluster: Putative uncharacterized protein; n=1; ...    33   3.9  

>UniRef50_Q95ZG3 Cluster: Spindle pole body component 97; n=2;
           Dictyostelium discoideum|Rep: Spindle pole body
           component 97 - Dictyostelium discoideum (Slime mold)
          Length = 1177

 Score = 33.1 bits (72), Expect = 3.0
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +2

Query: 29  KNKNLIMECYRKVFDYLSCIVNYLLVS--HSIFELRALFNFDTLANTMGSAHTEETTY 196
           KN+N+ ++   K +DY S I+  LL++  H I  L+A+ ++  L      +H  +TTY
Sbjct: 587 KNENVYIDKIEKAYDYASGILLNLLINERHLISRLKAIKHYFLLCKGDFFSHFMDTTY 644


>UniRef50_A2DQE5 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 791

 Score = 32.7 bits (71), Expect = 3.9
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -1

Query: 273 YFSQHLYYVAFLLGLGCKNEIHEFGMYVVSSVCADPIVFAKVS 145
           ++  H  Y + +L  G  +++ EF  YVV+SVC  P+V + +S
Sbjct: 490 FYMNHTLYGSIVLCFGALSKVPEFHSYVVNSVC--PVVLSLLS 530


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 446,421,938
Number of Sequences: 1657284
Number of extensions: 8475837
Number of successful extensions: 19547
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19546
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 24351434270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)