Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31262
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    26   2.4  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   5.6  
SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ...    25   5.6  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    25   7.3  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    24   9.7  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    24   9.7  

>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 297 KFDSTAFVYFSQHLYYVAFLLGLGCKNEIHEFGMYVVSS 181
           +  ST+ + F++HL Y   L    CK EI     Y  SS
Sbjct: 84  RLSSTSLLAFTRHLKYYLSLYLPSCKFEICSTNQYFSSS 122


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 17  MGIKKNKNLIMECYRKVFDYLSCIVNYLLVSHSIFELRAL 136
           +G+K  K L+ +C   +    S +VN LLV+ S   L  L
Sbjct: 71  IGLKICKTLVQKCRDNINVMASEVVNMLLVASSSKNLEVL 110


>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 284

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 160 IRQSIEIEKG--AQFKNRMRHQQIIHNAR*VIENF 62
           IR  ++IEK   AQ++ RMR Q  I N R   ++F
Sbjct: 117 IRHFLQIEKTYRAQYEQRMRRQLEIANPRATEDDF 151


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +3

Query: 114 LFLNCAPFSISILWRIQWDPRTQKKLHTFQIHEFHSCIQDLREMLR 251
           +F+      I+ + R+ W  +   +LH F  +E      ++ E+LR
Sbjct: 328 MFIYAIGCFINFILRVTWSMKLHPRLHQFHEYEMGIFSFEMLEILR 373


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 338 ISGLWRSEWRLCCVHNL 388
           +S  W S W LCC++ L
Sbjct: 12  LSQCWISPWSLCCLYIL 28


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 186 KLHTFQIHEFHSCIQDLREMLRSINAG 266
           KL    + +  S I DLRE +  +NAG
Sbjct: 599 KLDQQAVEDLRSKITDLRETVAKVNAG 625


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,680
Number of Sequences: 5004
Number of extensions: 39649
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)