Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31262
         (459 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0290 + 32878040-32880193,32881607-32881720                       29   2.4  
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630...    29   2.4  
01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953           28   4.2  
12_02_1091 - 26001129-26001181,26001292-26001325,26001339-260014...    27   7.3  

>03_06_0290 + 32878040-32880193,32881607-32881720
          Length = 755

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 38  NLIME-CYRKVFDYLSCIVNYLLVSHSIFELRALFN 142
           +++ME C    + Y +CI+ Y L   +IFE   LFN
Sbjct: 574 HMLMEGCLLNEYTY-NCILRYFLTKETIFEAAILFN 608


>02_05_0481 +
           29361542-29361669,29362091-29362341,29362820-29363002,
           29363099-29363206,29363583-29363697,29363781-29364819,
           29364904-29365014,29365268-29365326,29366601-29366763,
           29367162-29367435,29367530-29367680,29367766-29367877,
           29367978-29368143,29368261-29368331,29368474-29368565,
           29368721-29368883,29369134-29369205,29369236-29369263,
           29369519-29369910,29369991-29370106,29370201-29370498,
           29370820-29371139,29371332-29371590,29371985-29372302,
           29372423-29372527,29372648-29372776,29374001-29374381,
           29374467-29374604,29374949-29375185,29375264-29375569
          Length = 2094

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 78  YRAL*IICW-CRILFLNCAPFSISILWRIQWDP 173
           +R + ++C  C  LF    P S  ILW + W P
Sbjct: 6   HRGVVLVCSICGFLFAVLGPLSFWILWAVNWRP 38


>01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953
          Length = 946

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = -1

Query: 231 LGCKNEIHEFGMYVVSSVCADPIVFAKVSK 142
           L  K++++ FG+ ++ ++CA P+V  ++ K
Sbjct: 776 LTAKSDVYSFGVVLLEALCARPVVDPRLPK 805


>12_02_1091 - 26001129-26001181,26001292-26001325,26001339-26001437,
            26002327-26002369,26002389-26002494,26002776-26002818,
            26003526-26003579,26003831-26003911,26003997-26004119,
            26004197-26004846,26004928-26005554,26005633-26005870,
            26006082-26006258,26006373-26006723,26006824-26007111,
            26008340-26008462,26008551-26009007,26009115-26009263,
            26009466-26009489
          Length = 1239

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 222  KNEIHEFGMYVVSSVCADPIVFAKVSKLKRARNSKIECD 106
            +++IHE+G+  + S+ A+  V   V +L R + S I  D
Sbjct: 1038 RSKIHEWGLVALESIDAEDFVIEYVGELIRRQVSDIRED 1076


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,696,530
Number of Sequences: 37544
Number of extensions: 221341
Number of successful extensions: 487
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)