Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31262
         (459 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21208| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.11 
SB_31651| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.35 
SB_10926| Best HMM Match : Pkinase (HMM E-Value=3e-24)                 29   2.4  
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)                 27   5.6  
SB_20196| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_48711| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_34490| Best HMM Match : CUB (HMM E-Value=1.3e-07)                   27   7.5  
SB_46027| Best HMM Match : Fibrinogen_C (HMM E-Value=0.24)             27   9.9  
SB_33239| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.9  

>SB_21208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 111 ILFLNCAPFSISILWRIQWDPRTQKKLHTFQIHEFHSCI 227
           + FLN   F +++LW +  DP   KK  TFQ H F  C+
Sbjct: 593 VFFLNLVQFILTLLW-LALDPPQVKKDITFQKHMFLRCL 630


>SB_31651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 827

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 111 ILFLNCAPFSISILWRIQWDPRTQKKLHTFQIHEFHSCI 227
           + FLN   F +++LW +  DP   +K  TFQ H F  C+
Sbjct: 654 VFFLNLVQFILTLLW-LALDPPHVRKDITFQKHMFLRCL 691


>SB_10926| Best HMM Match : Pkinase (HMM E-Value=3e-24)
          Length = 1102

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 438 SFHVTLAFKNLILRSF-HRLWTQQSRHSERH-KP 343
           SFH T+   NLI RSF H  WT   ++ + H KP
Sbjct: 72  SFHETVEEINLIARSFSHLFWTPLLKNGDLHVKP 105


>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
          Length = 1258

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 62  KVFDYLSCIVNYLLVSHSIFELRAL 136
           K+FD +  ++NY+ VS S+F   A+
Sbjct: 735 KLFDIICLLINYISVSASLFSFTAI 759


>SB_20196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 17  MGIKKNKNLIMECYRKVFDYLSCIVNYLLV 106
           M + KN+    EC RK  +Y+ C+ N + V
Sbjct: 244 MRLMKNREAAKECRRKKKEYVKCLENRVAV 273


>SB_48711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 165 WDPRTQKKLHTFQIH 209
           WDP T K +HTF+ H
Sbjct: 141 WDPDTSKHIHTFKGH 155


>SB_34490| Best HMM Match : CUB (HMM E-Value=1.3e-07)
          Length = 242

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 279 FVYFSQHLYYVAFLLGLGC 223
           F++F +H Y++AFL  + C
Sbjct: 18  FIFFRRHFYFIAFLFMIIC 36


>SB_46027| Best HMM Match : Fibrinogen_C (HMM E-Value=0.24)
          Length = 901

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 128 RALFNFDTLANTMGSAHTEETTYIPNS*ISFLHPRPK 238
           R + +FDT+  T   A+ E   Y PN  +S +HP  K
Sbjct: 10  RVVNHFDTIDRTGFEANVENGIYFPNV-LSDIHPTGK 45


>SB_33239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 210 HEFGMYVVSSVCADPIVFAKVSKLKRARNSKIECDTNK 97
           HE  +Y V    ADP VFA +S   ++  + +   T+K
Sbjct: 41  HEDSVYAVEWSTADPWVFASLSYDVQSNTNNVSITTSK 78


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 139  QFRYFGEYNGIRAHRRNY 192
            +FRYF  YNG++  R N+
Sbjct: 1582 KFRYFHSYNGLKLFRGNF 1599


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,109,111
Number of Sequences: 59808
Number of extensions: 283477
Number of successful extensions: 666
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)