Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31262
         (459 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21410.1 68415.m02548 vacuolar proton ATPase, putative simila...    30   0.65 
At3g32400.1 68416.m04142 formin homology 2 domain-containing pro...    29   1.5  
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro...    29   2.0  
At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR...    28   2.6  
At5g57800.1 68418.m07228 CER1 protein, putative (WAX2) similar t...    28   3.5  
At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein ...    28   3.5  
At4g35200.1 68417.m05003 hypothetical protein contains Pfam prof...    27   8.1  

>At2g21410.1 68415.m02548 vacuolar proton ATPase, putative similar
           to vacuolar proton ATPase 100-kDa subunit from
           Dictyostelium discoideum P|1384136|gb|AAB49621
          Length = 821

 Score = 30.3 bits (65), Expect = 0.65
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 108 RILFLNCAPFSISILWRIQWDPRTQKKLHTFQIHEFHSCIQDLRE 242
           +++FLNC    +S+L  I+W   +Q  L+   I+ F S + DL E
Sbjct: 586 QMIFLNCLFGYLSVLIIIKWCTGSQADLYHVMIYMFLSPMDDLGE 630


>At3g32400.1 68416.m04142 formin homology 2 domain-containing
           protein / FH2 domain-containing protein common family
           members: At2g43800, At3g25500, At5g48360, At4g15200,
           At3g05470, At3g07540, At5g07780, At5g07650 [Arabidopsis
           thaliana];
          Length = 488

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 171 PRTQKKLHTFQIH-EFHSCIQDLREMLRSINAG*NKQKQCY 290
           PR + KL  F    +FHS + DLR  L +I++  N+  + +
Sbjct: 238 PRVETKLRVFSFKIQFHSQVTDLRRGLNTIHSATNEASRFF 278


>At2g25050.1 68415.m02996 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 1111

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 171 PRTQKKLHTFQIH-EFHSCIQDLREMLRSINAG*NK 275
           PR + KL  F    +FHS + DLR  L +I++  N+
Sbjct: 862 PRVETKLRVFSFKIQFHSQVTDLRRGLNTIHSAANE 897


>At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1183

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -1

Query: 291 DSTAFVYFSQHLYYVAFLLGLGCKNEIHEFGMYVVSSV 178
           D    V    H+  +  LL +GC++E+H  G++ +  +
Sbjct: 186 DLINLVGMEAHMMKMTLLLNIGCEDEVHMIGIWGMGGI 223


>At5g57800.1 68418.m07228 CER1 protein, putative (WAX2) similar to
           maize glossy1 homolog GI:2213643 from [Oryza sativa];
           contains Pfam profile PF01598: Sterol desaturase
          Length = 632

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 56  YRKVFDYLSCI--VNYLLVSHSIFELRALFNFDTLANTMGSAHTEE 187
           Y  +FD++ C+   N  + SH +FE+  +  +     T  S H +E
Sbjct: 211 YAVMFDFMRCLGHCNVEIFSHKLFEILPVLRYLIYTPTYHSLHHQE 256


>At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 353

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 26  KKNKNLIMECYR--KVFDYLSCIVNYLLVSHS 115
           ++NK +++ C    K F Y  C+ N+L V+HS
Sbjct: 71  RRNKKILIRCKECGKGFLYEKCLFNHLQVTHS 102


>At4g35200.1 68417.m05003 hypothetical protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 253

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 156 RIQWDPRTQKKLHTFQIHEFHSCIQDLREMLRSIN 260
           RI  + +++K L    +    SCIQDL + + S++
Sbjct: 206 RIDSEFQSEKSLQMEDVQNLESCIQDLEDGIESLS 240


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,800,766
Number of Sequences: 28952
Number of extensions: 193824
Number of successful extensions: 488
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)