Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31256
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    29   0.90 
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    25   8.4  
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    25   8.4  
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ...    25   8.4  

>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 422 YYEQFVLTLQFELCFILIVYSLNSRHN*KLLLWVLDILFIINFI 291
           Y+      L    C ++++  L+     KLL W++ ++FI  FI
Sbjct: 171 YFSAGAFVLFGSYCTLILMLRLDQLPGGKLLCWIIGVIFIAAFI 214


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +3

Query: 528 NCTFY*I*HCHWLN*IVPDRNKRKGSI--ISFKMSASIHLAEGRFTS 662
           NC  Y   HC WLN  +  RN R   I  +S  +SA      G +TS
Sbjct: 203 NCVEYLDHHCIWLNTCIGRRNYRYYFIFLLSVVLSALYLTGLGFYTS 249


>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +2

Query: 50  FDIRFLLFDNRWRCPPQSNISLDGRHDPKHQLY 148
           F+ + + F N+   PP++  ++  R DP+   Y
Sbjct: 75  FEHQVVCFPNQHNLPPETQYAITHRFDPESSTY 107


>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +3

Query: 21  ESRKYLLVEASIFAFCYSTTDG---VVRPSPTSHSTDVMILSINFIASSY 161
           E  K +  ++S   FC S TDG   V+   P   + ++++L++ +   +Y
Sbjct: 69  EVAKLIGADSSNIVFCNSATDGISTVLLTFPWEQNDEILMLNVAYPTCTY 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,879
Number of Sequences: 5004
Number of extensions: 49295
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)