Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31253
(332 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 104 3e-24
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 104 3e-24
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 32 0.020
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 0.75
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 27 0.75
SPAC19A8.09 |||ER to Golgi transport protein Yos1|Schizosaccharo... 26 1.7
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa... 26 1.7
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 25 2.3
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 24 5.3
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 24 5.3
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 24 7.0
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 23 9.2
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 23 9.2
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 104 bits (250), Expect = 3e-24
Identities = 50/97 (51%), Positives = 70/97 (72%)
Frame = +2
Query: 41 IQAVQVFGT*AKPPPQLRIASVVMGMLRVNGRPLDLVEPTLLQYKLQEPILLLGKEKFSM 220
+Q+VQ FG V G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+
Sbjct: 1 MQSVQCFGKKGNATAVAH-CKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAG 59
Query: 221 VDIRLTVKGGGHVAQVYAIRQAISKALIALYQKYVEQ 331
VDIR+ V GGGHV+Q+YAIRQAISKA++A YQK+V++
Sbjct: 60 VDIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDE 96
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 104 bits (250), Expect = 3e-24
Identities = 50/97 (51%), Positives = 70/97 (72%)
Frame = +2
Query: 41 IQAVQVFGT*AKPPPQLRIASVVMGMLRVNGRPLDLVEPTLLQYKLQEPILLLGKEKFSM 220
+Q+VQ FG V G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+
Sbjct: 1 MQSVQCFGKKGNATAVAH-CKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAG 59
Query: 221 VDIRLTVKGGGHVAQVYAIRQAISKALIALYQKYVEQ 331
VDIR+ V GGGHV+Q+YAIRQAISKA++A YQK+V++
Sbjct: 60 VDIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDE 96
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 32.3 bits (70), Expect = 0.020
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +2
Query: 113 GMLRVNGRPLDLVEPTLLQYKLQEPILLLGKEKFSMVDIRLTVKGGGHVAQVYAIRQAIS 292
G VNG P D+ ++ K L + + ++ TV GGG Q A+ AIS
Sbjct: 28 GKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVHGGGPTGQSGAVHAAIS 86
Query: 293 KALI 304
K+LI
Sbjct: 87 KSLI 90
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 27.1 bits (57), Expect = 0.75
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -3
Query: 240 TVNLMS-TIENFSLP-SKRIGS*SLYCNSVGSTKSNGRPFTRSIPMTTLAIRN 88
T N+ S T EN+ SK + S S+ NS ST S+ P T S+P ++ + N
Sbjct: 61 TSNVASNTSENYPYTGSKSLSSSSILSNSTISTSSS-TPITASVPTSSSILSN 112
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.1 bits (57), Expect = 0.75
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 51 SKYSVRKQNRHRSCVLQAW 107
SKY R QNR +C ++AW
Sbjct: 255 SKYQFRYQNRVSNCQIEAW 273
>SPAC19A8.09 |||ER to Golgi transport protein
Yos1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 81
Score = 25.8 bits (54), Expect = 1.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 86 AVAVLLTYRILGRPGWAARACL 21
AVA+L R LGR GW+ A L
Sbjct: 17 AVAILSEDRFLGRIGWSQSAAL 38
>SPAC637.08 |||iron-sulfur cluster assembly ATPase
Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 1.7
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = -3
Query: 237 VNLMSTIENFSLPSKRIGS*SLYCNSVGS----TKSNGRPFTRSIPMTTLAIRNCGGGFA 70
+ L+ + F PS + G +++ + G K G PF IP+ L R+C G +
Sbjct: 230 LGLVENMSGFVCPSCK-GKSNIFTITTGGGEALAKEMGLPFLGKIPLDPLIARSCDFGKS 288
Query: 69 YV 64
++
Sbjct: 289 FI 290
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 25.4 bits (53), Expect = 2.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 52 PSIRYVSKTATAVAYC 99
P++RY ATA+AYC
Sbjct: 559 PTLRYAGMFATALAYC 574
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 24.2 bits (50), Expect = 5.3
Identities = 12/60 (20%), Positives = 28/60 (46%)
Frame = +2
Query: 143 DLVEPTLLQYKLQEPILLLGKEKFSMVDIRLTVKGGGHVAQVYAIRQAISKALIALYQKY 322
D P + + +PILL ++++ + HV + + I++ L+A+ ++Y
Sbjct: 146 DSARPGCMPSSIAKPILLKSSLHYAVLAQIWNLADSAHVGYLEMYQYVIARHLVAICKQY 205
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 24.2 bits (50), Expect = 5.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 177 SLYCNSVGSTKSNGRPFTRSIPMTTLAIRNC 85
SLY NSV ST + + T+A NC
Sbjct: 291 SLYANSVYSTMAYAEATSNLAKYNTIAFGNC 321
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 23.8 bits (49), Expect = 7.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 237 VNLMSTIENFSLPSKRIGS*SLYC 166
+ LMS +E +SLP R + LYC
Sbjct: 1799 LRLMSLVEKYSLPFLRRVALVLYC 1822
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +1
Query: 244 GWGPCSTSLRYQTSYFKGSDRLI 312
GWGP SL T F S L+
Sbjct: 427 GWGPMKASLILSTDSFASSITLV 449
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 244 LDCQSDVNHREFFLAEQK 191
+D QSD N RE+ AE K
Sbjct: 56 VDTQSDSNEREYLAAEIK 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,544,904
Number of Sequences: 5004
Number of extensions: 31173
Number of successful extensions: 82
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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