Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31253
(332 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same... 100 5e-22
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C) 99 6e-22
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi... 98 1e-21
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con... 36 0.009
At4g24610.1 68417.m03525 expressed protein 28 1.8
At1g07970.1 68414.m00868 expressed protein 27 2.4
At3g50160.1 68416.m05483 hypothetical protein contains Pfam prof... 27 3.1
At2g29640.1 68415.m03601 josephin family protein contains Pfam d... 27 3.1
At2g11810.1 68415.m01269 1,2-diacylglycerol 3-beta-galactosyltra... 27 4.1
At5g20410.1 68418.m02427 1,2-diacylglycerol 3-beta-galactosyltra... 26 5.5
At1g78110.1 68414.m09103 expressed protein 26 5.5
At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containi... 26 7.2
At5g40090.1 68418.m04863 disease resistance protein-related cont... 26 7.2
At1g25570.1 68414.m03174 leucine-rich repeat protein-related co... 26 7.2
At3g05340.1 68416.m00582 pentatricopeptide (PPR) repeat-containi... 25 9.5
At2g21190.1 68415.m02514 ER lumen protein retaining receptor fam... 25 9.5
>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
GB:Q42340
Length = 146
Score = 99.5 bits (237), Expect = 5e-22
Identities = 41/73 (56%), Positives = 63/73 (86%)
Frame = +2
Query: 113 GMLRVNGRPLDLVEPTLLQYKLQEPILLLGKEKFSMVDIRLTVKGGGHVAQVYAIRQAIS 292
G++++NG P++L +P +L++K+ EPILLLGK +F+ V++R+ V GGGH +QVYAIRQ+I+
Sbjct: 30 GLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIA 89
Query: 293 KALIALYQKYVEQ 331
KAL+A YQKYV++
Sbjct: 90 KALVAYYQKYVDE 102
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +1
Query: 34 AAHPGRPSIRYVS--KTATAVAYCKRGHGNAACKRAPIGL 147
A P S++ KTA AV +CKRG G PI L
Sbjct: 2 ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIEL 41
>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
Length = 146
Score = 99.1 bits (236), Expect = 6e-22
Identities = 40/73 (54%), Positives = 63/73 (86%)
Frame = +2
Query: 113 GMLRVNGRPLDLVEPTLLQYKLQEPILLLGKEKFSMVDIRLTVKGGGHVAQVYAIRQAIS 292
G++++NG P++L +P +L++K+ EP+LLLGK +F+ V++R+ V GGGH +QVYAIRQ+I+
Sbjct: 30 GLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIA 89
Query: 293 KALIALYQKYVEQ 331
KAL+A YQKYV++
Sbjct: 90 KALVAYYQKYVDE 102
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +1
Query: 34 AAHPGRPSIRYVS--KTATAVAYCKRGHGNAACKRAPIGL 147
A P S++ KTA AV +CKRG G PI L
Sbjct: 2 ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIEL 41
>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
thaliana]
Length = 146
Score = 97.9 bits (233), Expect = 1e-21
Identities = 44/96 (45%), Positives = 70/96 (72%)
Frame = +2
Query: 44 QAVQVFGT*AKPPPQLRIASVVMGMLRVNGRPLDLVEPTLLQYKLQEPILLLGKEKFSMV 223
++VQ FG K + GM+++NG P++L +P +L++K+ EP+LLLGK +F+ V
Sbjct: 8 ESVQCFGR-KKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGV 66
Query: 224 DIRLTVKGGGHVAQVYAIRQAISKALIALYQKYVEQ 331
D+R+ GGG+ ++VYAIRQ+I+KAL+A YQKYV++
Sbjct: 67 DMRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDE 102
>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
contains Pfam profile PF00380: ribosomal protein S9
Length = 430
Score = 35.5 bits (78), Expect = 0.009
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = +2
Query: 113 GMLRVNGRPLDLVEPTLLQYKLQEPILLLGKEKFSMVDIRLTVKGGGHVAQVYAIRQAIS 292
G +VN + D+ P +L ++ L + DI+ TVKGGG QV AI+ IS
Sbjct: 326 GKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVKGGGTTGQVGAIQLGIS 384
Query: 293 KAL 301
+AL
Sbjct: 385 RAL 387
>At4g24610.1 68417.m03525 expressed protein
Length = 1145
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -2
Query: 172 VLQQCGLNQVQWAPVYTQHS 113
+L+ C L++V+W+ V TQHS
Sbjct: 831 LLESCKLDKVKWSGVRTQHS 850
>At1g07970.1 68414.m00868 expressed protein
Length = 693
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 225 STIENFSLPSKRIGS*SLYCNSVGSTKSNGR 133
S I +FS PSK++GS S+Y S S+ R
Sbjct: 204 SQISSFSTPSKQMGSPSMYLVPSSSPVSSNR 234
>At3g50160.1 68416.m05483 hypothetical protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 511
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 306 AIRAFEIACLIA*TCATWPP 247
+IRAFEIA + C TW P
Sbjct: 480 SIRAFEIARSVVIACGTWGP 499
>At2g29640.1 68415.m03601 josephin family protein contains Pfam
domain PF02099: Josephin; similar to Josephin-like
protein (Swiss-Prot:O82391) [Arabidopsis thaliana]
Length = 360
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 18 RKASTCSPSRPSKYSVRKQNRHRSCVLQ 101
+KAS+ S+PS SV N HRS ++
Sbjct: 310 KKASSSGISQPSVISVVNDNNHRSAAIE 337
>At2g11810.1 68415.m01269 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative identical to
monogalactosyldiacylglycerol synthase type C
[gi:9927295] from Arabidopsis thaliana, similar to MGDG
synthase type A [gi:9884651] from Glycine max
Length = 465
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 197 LGKEKFSMVDIRLTVKGGGHVAQVYAIRQA 286
+G E+ V I ++ GGGH A AIR A
Sbjct: 67 MGAERIKTVLILMSDTGGGHRASAEAIRDA 96
>At5g20410.1 68418.m02427 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative identical to
monogalactosyldiacylglycerol synthase [gi:3367638] from
Arabidopsis thaliana, similar to MGDG synthase type A
[gi:9884651] from Glycine max
Length = 468
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 188 ILLLGKEKFSMVDIRLTVKGGGHVAQVYAIRQA 286
++ +G E+ V I ++ GGGH A AIR A
Sbjct: 60 LIQIGAERTKNVLILMSDTGGGHRASAEAIRDA 92
>At1g78110.1 68414.m09103 expressed protein
Length = 342
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 33 CSPSRPSKYSVRKQNRHR 86
CSPSRPS S ++ HR
Sbjct: 38 CSPSRPSDSSTNRRPHHR 55
>At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 588
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 185 PILLLGKEKFSMVDIRLTVKGGGHVAQVYAIRQAIS 292
P+L L + K S V+ R+ V+ GH+A +A++
Sbjct: 139 PLLELMRRKMSWVEQRVVVRALGHLASYETTFEAVA 174
>At5g40090.1 68418.m04863 disease resistance protein-related
contains Pfam domain, PF00931: NB-ARC domain, a novel
signalling motif found in plant resistance gene products
Length = 385
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +2
Query: 200 GKEKFSMVDIRLTVKGGGHVAQVYAIRQA 286
G+E++ ++L K GGH+ +V+ + +A
Sbjct: 310 GREEWVAALLKLKAKQGGHIMEVWKLMEA 338
>At1g25570.1 68414.m03174 leucine-rich repeat protein-related
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains some similarity to light
repressible receptor protein kinase [Arabidopsis
thaliana] gi|1321686|emb|CAA66376
Length = 628
Score = 25.8 bits (54), Expect = 7.2
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -3
Query: 63 PNTWTAWMGCTCLPSCTAAIL 1
P +W AW G +C P+ + L
Sbjct: 402 PTSWDAWEGVSCRPNSQGSAL 422
>At3g05340.1 68416.m00582 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 658
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 52 PSIRYVSKTATAVAYCKRGHGNAACK 129
P YVS + A+ + GHG AA K
Sbjct: 419 PKRNYVSWNSMIAAFARHGHGLAALK 444
>At2g21190.1 68415.m02514 ER lumen protein retaining receptor family
protein similar to SP|P33948 ER lumen protein retaining
receptor. {Plasmodium falciparum}; contains Pfam profile
PF00810: ER lumen protein retaining receptor
Length = 269
Score = 25.4 bits (53), Expect = 9.5
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -2
Query: 199 EQKDRF-LKFVLQQCGLNQVQWAPVYTQHSHDHACNTQLRWRFCLRTEYLDGLDGLHVL 26
E+KD F L +VL C + V W T H+ ++ W FC+ E + L L V+
Sbjct: 128 EEKDNFALYYVLAPCVVLAV-WIHPSTSHN----ILNRISWGFCVYLEAVSVLPQLRVM 181
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,399,802
Number of Sequences: 28952
Number of extensions: 173822
Number of successful extensions: 489
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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