Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31250
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    27   1.1  
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    26   1.5  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   3.5  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   4.6  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    24   6.1  
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    24   6.1  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    24   8.0  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    24   8.0  

>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 330 HLVPSAFCPIQSIPIELKSETDRPTLVFRST 238
           + +PS   P+  +P+    + D+P L F  T
Sbjct: 833 YAIPSVIVPLHKMPLNPNGKIDKPALPFPDT 863


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 258 TLVFRSTPSCVNKSLYWS 205
           TLVF STP+  + S YWS
Sbjct: 336 TLVFESTPAYPDYSRYWS 353


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 309 CPIQSIPIELKSETDRPTLVFRSTPSCVNKSLYWSCNSSPELV 181
           C  Q+IPI    ET     ++ S   C +++++   N  P+L+
Sbjct: 145 CSSQAIPIVTAYETLGEDGIYTSLDECKSRAIFTDPNLIPKLL 187


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1429

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -1

Query: 327  LVPSAFCPIQSIPIELKSETDRPTLVFRSTPSCVNKSLYWS 205
            L+      +Q + ++L+  TD     F +TP    K+  WS
Sbjct: 952  LISIVSADLQDVGVDLRVFTDNAAFPFITTPIAKTKTPRWS 992


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 47  LSTDPVGFTLFVYIP*NYGVKFYIIRTYVVI 139
           L  +P+ F L +Y+   YG+ + ++  Y +I
Sbjct: 324 LFCEPIVFLLTLYMSFVYGILYLLLEAYPII 354


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 200 LHDQYKDLFTQDGVLLKTSVGRS 268
           L +Q KD+ +QDGV    +V R+
Sbjct: 165 LLNQLKDILSQDGVFYMVAVARN 187


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 138 LCVF*RVIVSSSSCLRVREMNYTTSTKTCSRKTGYF*RPVSVGRSP 275
           +C F R +VSS + LR+  ++ T S K C  +      P    ++P
Sbjct: 1   MCFFFR-LVSSFAILRISFLSITKSIKFCKLRALQVANPQRKAKTP 45


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 136 DCVYFNG*LYHHHHVYEFGR*ITRPVQRLVHARRGTSKDQCRS 264
           DC++ N  + HH H   + R    P  + +H RR     QC S
Sbjct: 713 DCLFINTQVKHHEHWKLWARKNWLP--KKLHLRRVNDTMQCVS 753


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,508,485
Number of Sequences: 5004
Number of extensions: 28637
Number of successful extensions: 81
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)