Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31250
(357 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1173 + 11092482-11093465,11093552-11093914 28 1.9
06_01_0137 - 1045301-1047601 28 2.5
03_02_0599 - 9730204-9730314,9730766-9731549,9731631-9732051,973... 28 2.5
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 27 3.3
10_08_0029 + 14270945-14271364,14271449-14272486 27 4.3
07_03_1370 + 26091340-26091489,26095713-26095817,26096693-260967... 27 4.3
05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371 27 4.3
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 27 5.7
07_03_1628 + 28236775-28237002,28237817-28237921,28239330-282394... 26 7.6
04_04_1203 - 31703512-31703832,31703922-31704351,31704454-317045... 26 7.6
>07_01_1173 + 11092482-11093465,11093552-11093914
Length = 448
Score = 28.3 bits (60), Expect = 1.9
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 164 IIIIMSTSSGDELHDQYKDLFTQDGVLLKTSVGRSVSDFNSIGML 298
+ + +S DE+ D+ +DL +DG LL+ +G V+ SI +L
Sbjct: 213 LTVSVSLRRRDEVGDELQDLAVEDGPLLERLLGHDVNWGPSIHVL 257
>06_01_0137 - 1045301-1047601
Length = 766
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +2
Query: 17 AIDYTILVLRLSTDPVGFTLFVY---IP*NYGVKFYIIRTYVVIVCILTGDCIIIIMSTS 187
A D + ++ D +GF Y +P F+++ Y+V ++ G C++ ++
Sbjct: 331 AADRAATLFQVFDDELGFVTEYYHSVLPVMLASPFFLLVNYIVFPVLVLGLCLMTVVLCG 390
Query: 188 SGD 196
+GD
Sbjct: 391 NGD 393
>03_02_0599 -
9730204-9730314,9730766-9731549,9731631-9732051,
9732139-9732385,9733730-9733921,9734071-9734204,
9734316-9734477,9736162-9736200,9737507-9737825
Length = 802
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 151 NG*LYHHHHVYEFGR*ITRPVQRLVHARRGTSKDQCRS 264
N + HHHHV+ + +T+ Q+ RG+S QC S
Sbjct: 632 NSFMQHHHHVHYYVHVMTQQ-QQQPSIERGSSDAQCGS 668
>03_05_0944 +
29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 27.5 bits (58), Expect = 3.3
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +3
Query: 45 DCRLIQLVLLCLFIFHEIMA*NFISLERML*LCVF*RVIVSSSSCLRVREMNYTTSTKTC 224
DC I +L LF+ H F S++ +L L ++ + C VR+M++ + +
Sbjct: 524 DCLTIMDLLQSLFVEHHSRVQEFFSVQSLLQLLLY----LVCHPCWEVRKMSFDATKRIL 579
Query: 225 SRKTG 239
S G
Sbjct: 580 SSSIG 584
>10_08_0029 + 14270945-14271364,14271449-14272486
Length = 485
Score = 27.1 bits (57), Expect = 4.3
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1
Query: 163 YHHHHVYEFGR 195
YHHHH+Y +G+
Sbjct: 425 YHHHHLYSYGQ 435
>07_03_1370 +
26091340-26091489,26095713-26095817,26096693-26096773,
26097588-26097665,26097752-26097811,26097911-26098186,
26098267-26098363,26098468-26098520
Length = 299
Score = 27.1 bits (57), Expect = 4.3
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 223 VHARRGTSKDQCRSVGLRFQLNRDALYWTERR 318
+ ARR KD +++N+ YWTE R
Sbjct: 74 LRARRSIKKDDMDDTPFNYEINKIKGYWTEIR 105
>05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371
Length = 1165
Score = 27.1 bits (57), Expect = 4.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 246 RSTPSCVNKSLYWSCN 199
R+ PSC N S +W CN
Sbjct: 94 RTNPSCWNASKFWFCN 109
>09_02_0077 +
3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -1
Query: 261 PTLVFRSTPSCVNKSLYWSCNSSPELVDMMMMIQS 157
P+L+ ++ S +N S WS + EL+ ++ M+ S
Sbjct: 276 PSLMQKAVDSIINGSTKWSTEFAEELLSLVSMLVS 310
>07_03_1628 +
28236775-28237002,28237817-28237921,28239330-28239410,
28240530-28240607,28241629-28241688,28241785-28242060,
28243511-28243607,28243710-28243765
Length = 326
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 223 VHARRGTSKDQCRSVGLRFQLNRDALYWTE 312
+ ARR KD +++N+ YWTE
Sbjct: 100 LRARRSLKKDNMDDTPFNYEINKIRGYWTE 129
>04_04_1203 -
31703512-31703832,31703922-31704351,31704454-31704551,
31704661-31704763,31704849-31704934,31705022-31705109,
31705194-31705358,31705412-31705500,31705622-31705734,
31707646-31707658
Length = 501
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -1
Query: 291 PIELKSETDRPTLVFRSTPSCVNKSLYWSCNSSP 190
P++L + T++F P CV+ L+ C +P
Sbjct: 65 PVDLGASCLSGTIIFNPLPFCVSIRLHGVCEENP 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,385,560
Number of Sequences: 37544
Number of extensions: 174194
Number of successful extensions: 447
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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