Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31250
         (357 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17182| Best HMM Match : Phospholip_A2_1 (HMM E-Value=5.8e-13)       28   2.6  
SB_6198| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-18)                  28   2.6  
SB_18073| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-16)                 27   3.4  
SB_10285| Best HMM Match : SAC3_GANP (HMM E-Value=4.8)                 27   5.9  
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)                      27   5.9  
SB_8252| Best HMM Match : rve (HMM E-Value=0.13)                       23   9.3  

>SB_17182| Best HMM Match : Phospholip_A2_1 (HMM E-Value=5.8e-13)
          Length = 182

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 176 MSTSSGDELHDQYKDLFTQDGVLLKTSVGRSVSDFNSIGMLC 301
           ++T    +++D  K    Q G +++   GRS  D+N+ G  C
Sbjct: 29  LATEDESDINDLIKRNLWQFGKVIRCMTGRSPWDYNNYGCYC 70


>SB_6198| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-18)
          Length = 347

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 58  SSWFYFVCLYSMKLWRKILYH*NVCCD-CVYFNG*LYHHHHVY 183
           S WF F  + ++++W   LY  +VC    V+  G  + +  +Y
Sbjct: 161 SFWFVFAAMSTVQIWSMTLYRVSVCLILAVFLVGTSFTYFRIY 203


>SB_18073| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-16)
          Length = 339

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 58  SSWFYFVCLYSMKLWRKILYH*NVC 132
           S WF F  + ++++W   LY  +VC
Sbjct: 162 SFWFVFAAMSTVQIWSMTLYRISVC 186


>SB_10285| Best HMM Match : SAC3_GANP (HMM E-Value=4.8)
          Length = 215

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 216 LYWSCNSSPELVDMMMMIQSPVKIHTITT 130
           L+ +CNS P  VD+  +++  VK+  + T
Sbjct: 169 LFQTCNSKPRGVDLAEIVREGVKVEELFT 197


>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
          Length = 2352

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 208 PVQRLVHARRGTSKDQCRSVGLRFQLNRDALYWTERRRN 324
           PVQ LVH  R   +++C+    RF    D  Y+T+  R+
Sbjct: 806 PVQILVHNHRRGPREKCQH---RFAYRYDQAYFTQTTRS 841


>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
          Length = 264

 Score = 23.0 bits (47), Expect(2) = 9.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 163 YHHHHVYEFGR*ITRP 210
           +HHHH + +   I RP
Sbjct: 249 HHHHHHHRYAMLINRP 264



 Score = 21.4 bits (43), Expect(2) = 9.3
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 160 LYHHHH 177
           LYHHHH
Sbjct: 232 LYHHHH 237


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,287,173
Number of Sequences: 59808
Number of extensions: 221901
Number of successful extensions: 612
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)