Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31250
         (357 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49790.1 68414.m05583 F-box family protein-related contains w...    29   1.2  
At4g18770.1 68417.m02773 myb family transcription factor (MYB98)...    27   4.9  
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf...    26   6.4  
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ...    26   6.4  
At3g61490.2 68416.m06887 glycoside hydrolase family 28 protein /...    26   8.5  
At3g61490.1 68416.m06886 glycoside hydrolase family 28 protein /...    26   8.5  
At2g47430.1 68415.m05920 cytokinin-responsive histidine kinase (...    26   8.5  
At1g36100.1 68414.m04488 myosin heavy chain-related similar to h...    26   8.5  

>At1g49790.1 68414.m05583 F-box family protein-related contains weak
           hit to TIGRFAM TIGR01640 : F-box protein interaction
           domain
          Length = 283

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -1

Query: 312 FCPIQSIPI-ELKSETDRPTLV-FRSTPSCVNKSLYWS 205
           +C I  + I E + +   P  V +R   +CVN S+YWS
Sbjct: 130 YCQILDVNIGEWRKQRQPPYFVGYREKSACVNGSIYWS 167


>At4g18770.1 68417.m02773 myb family transcription factor (MYB98)
           identical to transcription factor (MYB98) GI:15375282
           from [Arabidopsis thaliana]
          Length = 427

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 276 SETDRPTLVFRSTPSCVNKSLYWSCNSSPELVD 178
           S +  P L  ++T SC+N + +  C+    +VD
Sbjct: 64  SSSSHPLLSVQTTSSCINNAPFEHCSYQENMVD 96


>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 654

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 162 VSSSSCLRVREMN-YTTSTKTCSRKTGYF*RPVSVGRSPISTQSGCSVLD 308
           V S+ CL V   N Y TS +       YF      G+  I   SGCSV+D
Sbjct: 356 VGSNDCLGVFAHNSYVTSVQFNPVNENYFMSGSIDGKVRIWNISGCSVVD 405


>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
           identical to DNA Helicase [Arabidopsis thaliana]
           GI:11121445
          Length = 705

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = +2

Query: 98  YGVKFYIIRTYVVIVCILTGDCIIIIMSTSSGDELHDQYKDLFTQDGVLLKTSVGRSVSD 277
           +G+  Y      +I  I+TG  +++IM+   G  L  Q   +  + G  L  S   S+  
Sbjct: 85  FGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAML-RGGTTLVVSPLLSLIQ 143

Query: 278 FNSIGMLCIGQNA 316
              +G+  +G +A
Sbjct: 144 DQVMGLAALGISA 156


>At3g61490.2 68416.m06887 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15)
           (Pectinase) {Agrobacterium tumefaciens}; contains
           PF00295: Glycosyl hydrolases family 28
          Length = 476

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
 Frame = +2

Query: 98  YGVKFYIIRTYVVI---VCILTGDCIIIIMSTSSGDELHDQYKDLF---TQDGVLLKTSV 259
           YG+ F +   ++VI    CI      I + S  SG     + +D+    T+ GV +KT+V
Sbjct: 265 YGISFGMPTKHLVIRRLTCISPYSAAIALGSEMSGGIEDVRAEDITAYQTESGVRIKTAV 324

Query: 260 GR 265
           GR
Sbjct: 325 GR 326


>At3g61490.1 68416.m06886 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15)
           (Pectinase) {Agrobacterium tumefaciens}; contains
           PF00295: Glycosyl hydrolases family 28
          Length = 476

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
 Frame = +2

Query: 98  YGVKFYIIRTYVVI---VCILTGDCIIIIMSTSSGDELHDQYKDLF---TQDGVLLKTSV 259
           YG+ F +   ++VI    CI      I + S  SG     + +D+    T+ GV +KT+V
Sbjct: 265 YGISFGMPTKHLVIRRLTCISPYSAAIALGSEMSGGIEDVRAEDITAYQTESGVRIKTAV 324

Query: 260 GR 265
           GR
Sbjct: 325 GR 326


>At2g47430.1 68415.m05920 cytokinin-responsive histidine kinase
           (CKI1) identical to GB:D87545
          Length = 1122

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 200 LHDQYKDLFTQDGVLLKTSVGRSVSDFNSIGMLCIGQNADG--TKCI 334
           LH +   ++T+DG +L      + S F S G +C G+ ++   ++CI
Sbjct: 242 LHGEELYMWTKDGTVLVREGSLNDSFFISNGSICFGRESNSLWSQCI 288


>At1g36100.1 68414.m04488 myosin heavy chain-related similar to
           hypothetical protein GI:4263830 from [Arabidopsis
           thaliana] (similar to MYOSIN HEAVY CHAIN
           [Encephalitozoon cuniculi] GI:19074177) (similar to
           MYOSIN HEAVY CHAIN [Encephalitozoon cuniculi]
           GI:19074177)
          Length = 187

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 186 VREMNYTTSTKTCSRKTGYF*RPVSVGRSPISTQS 290
           V E+N   S ++ S+K GYF    SV R+P  T S
Sbjct: 135 VPELNELLSVRSSSKKVGYF----SVIRTPTRTSS 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,778,272
Number of Sequences: 28952
Number of extensions: 148164
Number of successful extensions: 380
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)