Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31249
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    28   0.60 
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    26   3.2  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.6  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    24   9.8  

>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +1

Query: 304 CLINFRW*F---LRLPWLPRVTGNQGSIPEREPEKRLP 408
           C+IN  W     LRL +L +   NQ S  E++ EKR+P
Sbjct: 271 CMINETWPVDRALRLQFLIQQRNNQSSNEEQKQEKRVP 308


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 417 PWMW*PFLRLPLRNRTLIPRYPWQPW*SQKLPS 319
           P MW      P  N+ +   YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 68  NGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSD 172
           N  IY+ +F  ++S++ + + I  L   +RT++SD
Sbjct: 14  NTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSD 48


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 301 HLKDASPVLDHAICKSYPDSSKLTTSDAR 215
           HL+D S    H++ KS    + L TSD R
Sbjct: 211 HLQDVSSPSAHSLEKSLHKPASLQTSDKR 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,982,445
Number of Sequences: 5004
Number of extensions: 38849
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)