Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31249
         (462 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   0.66 
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    29   2.0  
At3g08510.1 68416.m00988 phosphoinositide-specific phospholipase...    28   3.5  
At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putati...    27   6.2  
At5g12460.1 68418.m01464 fringe-related protein similarity to pr...    27   8.2  
At4g38560.1 68417.m05459 expressed protein                             27   8.2  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    27   8.2  

>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 30.3 bits (65), Expect = 0.66
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 247 DSSKLTTSDARPSVDWF*SNKSTHPITGQSSD 152
           DS     S  RPS+DWF  N+S +  +  SS+
Sbjct: 223 DSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 430 RLLPSLDVVAVSQAPSPESNPDSPLPVATMVVAE 329
           RLLPSL VV+   +P+ +  P S LP + + V E
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117


>At3g08510.1 68416.m00988 phosphoinositide-specific phospholipase C
           (PLC2) identical to phosphoinositide specific
           phospholipase C(AtPLC2) GI:857374 [Arabidopsis thaliana]
          Length = 581

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = -3

Query: 361 PLPVATMVVAETTIES**GRHLKDASPVLDHAICKSYPDSSKLTTSDARPSVDW 200
           P  V  + ++E  +E    ++ K       H + + YP  +++T+S+  P V W
Sbjct: 339 PDKVRRLSLSEEQLEKAAEKYAKQIVRFTQHNLLRIYPKGTRVTSSNYNPLVGW 392


>At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putative
           (PAUSED) contains Pfam profile: PF04150 exportin-t,
           identical to PAUSED gi:30909318
          Length = 988

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = -1

Query: 276 LTMRSAKVIQIHQN*RLRTRGPPSIGFDLIKALIPSLVRVLIACISSRITTVIQ 115
           LT  + +V++ H+  RL +    ++  DL+  ++PS+  V+  C      +++Q
Sbjct: 304 LTGYAVEVLECHK--RLNSEDTKAVSMDLLNEVLPSVFYVMQKCEVDSTFSIVQ 355


>At5g12460.1 68418.m01464 fringe-related protein similarity to
           predicted proteins + similar to hypothetical protein
           GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
           Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 415

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 350 GNHGSRRNYHRKLIRQTFERCVAGT*PCDLQKLS 249
           GNH SR     ++I  T  + V G   CD+Q ++
Sbjct: 363 GNHSSRNITQVRVIATTMHKMVEGIECCDVQNVN 396


>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 56  GDTANGSIYQFWFLRSYSVTWITVVILEL 142
           GD A+GS  Q    +SYS+  +  V+LEL
Sbjct: 360 GDIASGSKLQSLRTKSYSLETLAAVVLEL 388


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 421 PSLDVVAVSQAPSPESNPDSPLPVATMVVAETTIES 314
           PS    A + APSP +NP    P     V++   ES
Sbjct: 39  PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,563,322
Number of Sequences: 28952
Number of extensions: 214203
Number of successful extensions: 579
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)