Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31248
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   2.6  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    26   2.6  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   2.6  
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    25   5.9  
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   7.8  
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    25   7.8  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   7.8  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 131  VFVYPYEPTPKESEPFKSVGPDNKPFGYP 217
            + VY + P   +SE F +V  DN    YP
Sbjct: 4194 ILVYQHLPDSSQSETFLNVVTDNSAVDYP 4222


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 11/58 (18%), Positives = 28/58 (48%)
 Frame = -2

Query: 286 VAQAFLEEHVRLFEVLRKNGAIEWITEWFVVRTNRLEWL*LLRCRFIRIDEYKQLEGE 113
           +++AF  +H+  + +L++   +E +    + +T   +W       F  ++ Y +L  E
Sbjct: 346 ISEAFYYDHIVSYYMLKQPDFVEGVNAQLITKTKNPKWSKSHEYHFKDLENYFKLPSE 403


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 270  RKAWATMKENYSPIYLTFLTIHQIKRNYNALISKSKRTQTIC 395
            RK    +KE  +   L    +H+I R  NAL ++   T  IC
Sbjct: 1717 RKISVALKELNATNLLQKAALHKISRFVNALCNEESLTDAIC 1758


>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 126 SWKGNPSYVPLGSISLEGIVSRGVEHV 46
           SWK    +V  G I   G+ + GV+H+
Sbjct: 127 SWKAMEEFVDSGDIRSVGVSNYGVKHL 153


>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 306 PIYLTFLTIHQIKRNYNALISKSKRTQTIC 395
           P+Y     +  + R Y  L+S +  TQTIC
Sbjct: 32  PLYCVVCFVSVLCRLYCILMSAASATQTIC 61


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 155 SVHTDRRIQTAGRGIHRMY 99
           S HT RR QT+G+  H+ Y
Sbjct: 76  SGHTKRRSQTSGKKTHQPY 94


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 140 YPYEPTPKESEPFKSVGPDNKPF 208
           YP E +   S   + VGP +KPF
Sbjct: 173 YPMESSDSSSTEQQLVGPSSKPF 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,920,696
Number of Sequences: 5004
Number of extensions: 41428
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)