Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31248
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0063 - 18756289-18756390,18756769-18756954,18757053-187572...    29   1.5  
12_02_0499 - 19725896-19726339,19726918-19726960,19727286-197273...    27   7.9  
12_02_0046 + 12830974-12832386                                         27   7.9  

>11_05_0063 -
           18756289-18756390,18756769-18756954,18757053-18757223,
           18757339-18757383,18758087-18758260,18758801-18758887,
           18759349-18759510,18759945-18760015,18760296-18760435,
           18760828-18760952,18761329-18761463,18762069-18762314,
           18762530-18762755,18763039-18763091
          Length = 640

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 128 FVFVYPYEPTPKESEPFKSVGPDNKPFGYPFDR 226
           F   +PYEPTP +++ F  V  D      P DR
Sbjct: 79  FTAEFPYEPTPDQNQAFIDVDKDLTERETPMDR 111


>12_02_0499 -
           19725896-19726339,19726918-19726960,19727286-19727389,
           19727784-19728539
          Length = 448

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 13  RLLGPRERIPTDMFNSSGHYAFKADAA*GYIRWIP 117
           RLLG   R+P+  F+ SG+ +  + ++     W P
Sbjct: 86  RLLGLWRRLPSSSFSGSGYRSTSSSSSLAAFEWAP 120


>12_02_0046 + 12830974-12832386
          Length = 470

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
 Frame = +2

Query: 59  PRDTMPSR-LMLPKGTYDGFPFQLFVFVY-----PYEPTPKESEPFKSVGPDNKPFGY-- 214
           PR   PSR +M P   Y   PF+     +     P+EP P    P +S   D     Y  
Sbjct: 319 PRPAPPSRRVMAPLPPYPMDPFETPPSPHAPRHDPFEPPPSPDPPIQSYAIDPPIQSYAM 378

Query: 215 -PFDRPVLP 238
            PF++P  P
Sbjct: 379 DPFEQPPSP 387


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,934,725
Number of Sequences: 37544
Number of extensions: 257780
Number of successful extensions: 544
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)