Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31248
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)                 28   3.5  
SB_56573| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_39528| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)                      28   4.6  
SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_29504| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.1  
SB_26475| Best HMM Match : Cadherin (HMM E-Value=0.009)                27   6.1  
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)                       27   6.1  
SB_53346| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +2

Query: 65  DTMPSRLMLPKGTYDGFPFQLFV--FVYPYEPTPKESEPFKSVGPDNKPFGYPFDRPVLP 238
           +T P+ +++P GT       ++    + PY P P +  P  S        GYP   P  P
Sbjct: 95  ETSPNAVIIPPGTDPQLANLVYPPPSMAPYPPGPNQGTPPPSTQQQPGSGGYPMMYPQQP 154

Query: 239 QYF 247
            Y+
Sbjct: 155 GYY 157


>SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 74  PSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVGPDNKPFGYP 217
           PS ++ P+  Y G+PFQ     YP  P P     F  + P + P  YP
Sbjct: 169 PSPVLSPQ-VYRGYPFQ-----YPGTPPPPMYPAFPPIFPSSPPPEYP 210


>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
          Length = 2084

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 47   TCSTPRDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKS 184
            TC  PR++   R+ +P     GFP Q F+ VY    T      F++
Sbjct: 2031 TC-LPRESRFCRIHVPSSLLGGFPVQSFIGVYLGRSTGSPGNGFEA 2075


>SB_56573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 202 FVVRTNRLEWL*LLRCRFIRIDE-YKQLEGESIVCTLRQHQP*RHSVPRS*TCQ*ESF 32
           F+V  +   WL + +   +R+ E  K   GE + CTLR  +    ++P S     ES+
Sbjct: 104 FIVAKHDQPWLKVQKDEVLRVRETVKDRAGEHLRCTLRNDESREVNIPLSYQADFESY 161


>SB_39528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1029

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 246 SNNLTCSSR-KAWATMKENYSPIYLTFLTIHQIKRNYNALISKSKRTQTIC 395
           +NNLT   + K W  +    + + + + T+ +++  + AL S +K+    C
Sbjct: 43  TNNLTNQMKQKVWLDITAKINAVGVAYRTVEEVRVKWKALFSVAKKRMLRC 93


>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
          Length = 468

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 18/63 (28%), Positives = 34/63 (53%)
 Frame = +3

Query: 195 TTNHSVIHSIAPFFLSTSNNLTCSSRKAWATMKENYSPIYLTFLTIHQIKRNYNALISKS 374
           T +  V+++++  + + S N    S K   T+ +NYS +   +LT   + +NY+ L SK+
Sbjct: 78  TLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTLSKNYLT---LSKNYSTL-SKN 133

Query: 375 KRT 383
             T
Sbjct: 134 YST 136


>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 192 RTTNHSVIHSIAPFFLSTSNNLTCSSRKAWATMKENYSPIYLTFLT 329
           + +N +   +IAP    T +N T +S+ AW T   N +    T  T
Sbjct: 384 QNSNTTTTTTIAPAPEGTKSNTTVTSKPAWLTQNSNTTTTTSTIAT 429



 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 201 NHSVIHSIAPFFLSTSNNLTCSSRKAWATMKEN 299
           N +   +IAP    T +N T +S+ AW T   N
Sbjct: 355 NTTTTTTIAPAAEGTKSNTTVTSKPAWLTQNSN 387


>SB_29504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 20  WDQGKGFLLTCSTPRDTMPSRLMLPK 97
           W++ +GF+   S+P    PSR   P+
Sbjct: 50  WNEARGFMAGSSSPEPVKPSRCAAPR 75


>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1894

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 143 PYEPTPKESEPFKSVGPDNKPF 208
           P+ P  +  +PF+SV P  +PF
Sbjct: 599 PFRPEQQPQQPFRSVQPPQQPF 620



 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 143 PYEPTPKESEPFKSVGPDNKPF 208
           P+ P  +  +PF+SV P  +PF
Sbjct: 509 PFRPGQQPQQPFRSVQPPQQPF 530


>SB_26475| Best HMM Match : Cadherin (HMM E-Value=0.009)
          Length = 340

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = +2

Query: 29  GKGFLLTCSTPRDTMPSRLMLPKGT-YDGFPFQLFVFVYPYEPT--PKESEPFKSVGPDN 199
           G  +L+  S   +  P+ + L + T Y+  P   +V     E    P +S  F  VGPD 
Sbjct: 9   GTRYLILISIDVNEAPTLIELSRNTAYENSPAGTYVGTLTCEDPEMPDDSCTFSVVGPDG 68

Query: 200 KPFGYPFD 223
            PF    D
Sbjct: 69  VPFAVRSD 76


>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
          Length = 644

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +3

Query: 195 TTNHSVIHSIAPFFLSTSNNLTCSSRKAWATMKENYSPIYLTFLTIHQIKRNYNAL 362
           T +  V+++++  + + S N    S K   T+ +NYS +   +LT   + +NY+ L
Sbjct: 78  TLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTLSKNYLT---LSKNYSTL 130



 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/52 (23%), Positives = 32/52 (61%)
 Frame = +3

Query: 195 TTNHSVIHSIAPFFLSTSNNLTCSSRKAWATMKENYSPIYLTFLTIHQIKRN 350
           T +  ++++++  +L+ S  L  +  K  +T+++NYS +   +LT+ +I ++
Sbjct: 157 TLSIKLLNTLSKNYLTLSIKLLNTLSKNSSTLRKNYSTLSRNYLTLRRIPQH 208


>SB_53346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/50 (22%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 246 SNNLTCSSR-KAWATMKENYSPIYLTFLTIHQIKRNYNALISKSKRTQTI 392
           +NNLT   + K W  +    + + + + T+ +++  + AL S +K+  ++
Sbjct: 45  TNNLTNQMKQKVWLDITAKVNAVGVAYRTVEEVRVKWKALFSVAKKEYSV 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,152,941
Number of Sequences: 59808
Number of extensions: 304714
Number of successful extensions: 877
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)