Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31248
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    31   0.33 
Z83230-6|CAB05746.1|  336|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U53337-4|AAA96186.2|  636|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical pr...    23   6.1  

>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +2

Query: 149 EPTPK-ESEPFKSVGPDNKPFGYPFDRPV-LPQYFKQPNMFFKKGLGYHEGELFPYLFNI 322
           +PTPK +SEPF    P +KP   PF  P+  P+   +P     K +  H+ + FP     
Sbjct: 7   KPTPKPKSEPFPKPMPKSKPKSEPFPSPMPFPKPMPKPKP-KPKPMPKHKPKPFPKPMLF 65

Query: 323 PHYTP 337
           P   P
Sbjct: 66  PKPMP 70



 Score = 29.9 bits (64), Expect = 1.00
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +2

Query: 134 FVYPYEPTPKESEPFKSVGPDNKPFGYPFDRP-VLPQYFKQP---NMFFKKGLGYHEGEL 301
           F  P   +  +SEPF S  P  KP   P  +P  +P++  +P    M F K +  H+ + 
Sbjct: 17  FPKPMPKSKPKSEPFPSPMPFPKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPKHKPKP 76

Query: 302 FPYLFNIPHYTP 337
           FP     P   P
Sbjct: 77  FPKPMLFPKPMP 88


>Z83230-6|CAB05746.1|  336|Caenorhabditis elegans Hypothetical
           protein F56A8.6 protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +2

Query: 143 PYEPTPKESEPFKSVGPD-NKPFGYPFDRPVLPQY 244
           P  P P  + P  S+GP    P G P   P  PQY
Sbjct: 222 PMPPKPTFAHPGPSMGPPMGPPMGPPMGHPQAPQY 256


>U53337-4|AAA96186.2|  636|Caenorhabditis elegans Hypothetical
           protein R02E12.2a protein.
          Length = 636

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
 Frame = +2

Query: 161 KESEPFKSVGPDN---KPFGYPFD-------RPVLPQYFKQPNMFFKK--GLGYHEGELF 304
           KE+EP  ++ P++   K +GY  D       +P+L +Y + P  FFK+     +   ++ 
Sbjct: 203 KENEP--AIPPNHFEGKVYGYLVDDMSAIGIQPILDKYNEDPEKFFKRFDSKPWFRRKVM 260

Query: 305 PYLFNIPHYTP 337
           P LF   H +P
Sbjct: 261 PLLFGKSHKSP 271


>U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical
           protein C06E7.4 protein.
          Length = 500

 Score = 23.0 bits (47), Expect(2) = 6.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 305 PYLFNIPHYTPDKAQL*CSHK*K*ANSNYM 394
           PY+ + PH+   KAQ+  S     A+S YM
Sbjct: 45  PYMHHNPHHPQSKAQMRRSMISLNADSGYM 74



 Score = 22.6 bits (46), Expect(2) = 6.1
 Identities = 11/39 (28%), Positives = 14/39 (35%)
 Frame = +2

Query: 146 YEPTPKESEPFKSVGPDNKPFGYPFDRPVLPQYFKQPNM 262
           Y P P       S      P+     RP+ P  F +P M
Sbjct: 9   YPPPPHWMHQRTSYSTTTSPYPEAKQRPIAPGAFAEPYM 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,476,391
Number of Sequences: 27780
Number of extensions: 232702
Number of successful extensions: 594
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)