Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31248
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03480.1 68416.m00346 transferase family protein similar to h...    31   0.53 
At4g13390.1 68417.m02092 proline-rich extensin-like family prote...    29   1.2  
At5g02760.1 68418.m00218 protein phosphatase 2C family protein /...    28   2.8  
At1g02190.2 68414.m00150 CER1 protein, putative similar to CER1 ...    28   2.8  
At1g02190.1 68414.m00149 CER1 protein, putative similar to CER1 ...    28   2.8  
At5g06630.1 68418.m00749 proline-rich extensin-like family prote...    27   5.0  
At1g23720.1 68414.m02994 proline-rich extensin-like family prote...    27   6.5  
At5g54070.1 68418.m06731 heat shock transcription factor family ...    27   8.7  
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr...    27   8.7  
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr...    27   8.7  
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex...    27   8.7  
At2g38090.1 68415.m04676 myb family transcription factor contain...    27   8.7  

>At3g03480.1 68416.m00346 transferase family protein similar to
           hypersensitivity-related gene GB:CAA64636 [Nicotiana
           tabacum]; contains Pfam transferase family domain
           PF00248
          Length = 454

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +2

Query: 71  MPSRLMLPKGTYDGFPFQLF----VFVYPYEPTPKESEPFKSVGPDNKPFGYPFDRPVLP 238
           M  ++ LP+ T  G  F++       V P +PTP+E +P   +       G  F  PV+ 
Sbjct: 1   MDHQVSLPQSTTTGLSFKVHRQQRELVTPAKPTPRELKPLSDIDDQQ---GLRFQIPVI- 56

Query: 239 QYFKQPNM 262
            +F +PN+
Sbjct: 57  -FFYRPNL 63


>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 429

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 134 FVYPYEPTPKESEPFKSVGPDNKPFGYPFDRPVLPQYFK-QPNMFFK 271
           +VY + P P    P   VG  + P  Y +  P  P Y+   P + +K
Sbjct: 206 YVYSFPPPPPYYSPSPKVGYKSPPAPYVYSSPPPPPYYSPSPKVNYK 252



 Score = 28.3 bits (60), Expect = 2.8
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +2

Query: 134 FVYPYEPTPKESEPFKSVGPDNKPFGYPFDRPVLPQYFK-QPNMFFKKGLGYHEGELFPY 310
           +VY   P P    PF  V   + P  Y ++ P  P Y+   P + +K           PY
Sbjct: 370 YVYNSPPPPPYYSPFPKVEYKSPPPPYIYNSPPPPPYYSPSPKITYKSPPP-------PY 422

Query: 311 LFNIPHY 331
           ++  P+Y
Sbjct: 423 IYKTPYY 429



 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = +2

Query: 134 FVYPYEPTPKESEPFKSVGPDNKPFGYPFDRPVLPQYFKQPNMFFK 271
           +VY   P P    P   V   + P  Y +  P  P Y   P + FK
Sbjct: 232 YVYSSPPPPPYYSPSPKVNYKSPPPPYVYSSPPPPPYSPSPKVEFK 277


>At5g02760.1 68418.m00218 protein phosphatase 2C family protein /
           PP2C family protein similar to Ser/Thr protein
           phosphatase 2C (PP2C6) (GI:15020818) [Arabidopsis
           thaliana]; similar to protein phosphatase 2C
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 370

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 138 TNTNSWKGNPSYVPLGSISLEGIVSRGVEHVS 43
           T T  W  NP    +GS  L G++  G+ +++
Sbjct: 125 TVTKQWPTNPQMASVGSCCLAGVICNGLVYIA 156


>At1g02190.2 68414.m00150 CER1 protein, putative similar to CER1
           GI:1199467 and maize gl1 homolog (glossy1 locus)
           GI:1209703 from [Arabidopsis thaliana]
          Length = 623

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 198 TNHSVIHSIAPFFLSTSNNLTCS-SRKAWATMKENYSPIYLTFLTIH 335
           TN+S+   I  F   T++NLT S   ++    +E+   I+LT LT H
Sbjct: 257 TNYSLFMPIYDFIYGTTDNLTDSLYERSLEIEEESPDVIHLTHLTTH 303


>At1g02190.1 68414.m00149 CER1 protein, putative similar to CER1
           GI:1199467 and maize gl1 homolog (glossy1 locus)
           GI:1209703 from [Arabidopsis thaliana]
          Length = 627

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 198 TNHSVIHSIAPFFLSTSNNLTCS-SRKAWATMKENYSPIYLTFLTIH 335
           TN+S+   I  F   T++NLT S   ++    +E+   I+LT LT H
Sbjct: 257 TNYSLFMPIYDFIYGTTDNLTDSLYERSLEIEEESPDVIHLTHLTTH 303


>At5g06630.1 68418.m00749 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 440

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 134 FVYPYEPTPKESEPFKSVGPDNKPFGYPFDRPVLPQYFKQPNMFFK 271
           +VY   P P  S P   V   + P  Y +  P  P Y   PN+++K
Sbjct: 308 YVYSSPPPPYYS-PSPKVYYKSPPPPYVYSSPPPPYYSPSPNVYYK 352


>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 895

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 18/60 (30%), Positives = 23/60 (38%)
 Frame = +2

Query: 92  PKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVGPDNKPFGYPFDRPVLPQYFKQPNMFFK 271
           PK TY   P     +VY   P P    P   V   + P  Y +  P  P Y   P + +K
Sbjct: 727 PKPTYKSPPPP---YVYSSPPPPPYYSPSPKVEYKSPPPPYVYSSPPPPYYSPSPKVEYK 783


>At5g54070.1 68418.m06731 heat shock transcription factor family
           protein contains Pfam profile: PF00447 HSF-type
           DNA-binding domain
          Length = 331

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
 Frame = +2

Query: 161 KESEPFKSVGPDNKPF----GYPFDRPVLPQYFKQPN 259
           K ++P  S  P  K F     Y F   +LP+YFK  N
Sbjct: 83  KVTDPVVSWSPTRKSFIIWDSYEFSENLLPKYFKHKN 119


>At5g10350.2 68418.m01201 polyadenylate-binding protein family
           protein / PABP family protein contains weak similarity
           to poly(A) binding protein II from [Mus musculus]
           GI:2351846, [Xenopus laevis] GI:11527140; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 202

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 188 GPDNKPFGYPFDRPVLPQYFKQP 256
           G  N   GY F RP +P YF  P
Sbjct: 176 GRFNPSMGYRFRRPFVPPYFYSP 198


>At5g10350.1 68418.m01200 polyadenylate-binding protein family
           protein / PABP family protein contains weak similarity
           to poly(A) binding protein II from [Mus musculus]
           GI:2351846, [Xenopus laevis] GI:11527140; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 217

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 188 GPDNKPFGYPFDRPVLPQYFKQP 256
           G  N   GY F RP +P YF  P
Sbjct: 176 GRFNPSMGYRFRRPFVPPYFYSP 198


>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycsimilar to extensin-like protein [Lycopersicon
           esculentum] gi|5917664|gb|AAD55979; contains
           leucine-rich repeats, Pfam:PF00560; contains proline
           rich extensin domains, INTERPRO:IPR002965
          Length = 470

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = +2

Query: 134 FVYPYEPTPKESEPFKSVGPDNKPFGYPFDRPVLPQYFKQP 256
           +VYP  P P  S P     P   P+ YP   P  P Y   P
Sbjct: 408 YVYPSPPPPPPSPPPYVYPPPPPPYVYP--PPPSPPYVYPP 446


>At2g38090.1 68415.m04676 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 298

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = -3

Query: 204 GLLSGPTDLNGSDSLGVGSY-G*TNTNSWKGNPSYVPLGSISLEGIVSRGVEHVSRNPFP 28
           GL+  P   + S +L  G Y G +  N +  N  Y         G  +R  EH  +   P
Sbjct: 84  GLIPIPGYASDSFTLDWGGYDGASGNNGFNMNGYYFSAAG-GKRGSAARTAEHERKKGVP 142

Query: 27  WSQEPCR 7
           W++E  R
Sbjct: 143 WTEEEHR 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,844,899
Number of Sequences: 28952
Number of extensions: 216731
Number of successful extensions: 771
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)