Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31247
(308 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 74 4e-15
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 27 0.64
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 27 0.64
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 26 1.1
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 26 1.1
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 3.4
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 24 5.9
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 24 5.9
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 23 7.9
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb... 23 7.9
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 74.1 bits (174), Expect = 4e-15
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +3
Query: 117 KGLAVFTSGGDSQGMNAAVRSVVRMGIYLGCKVYFIREGYQGMVDGGDNIEEANWSSV 290
K +AV TSGGDS GMNA VR+V R+ I+ GC + I EGY+G+V GGD I++ W V
Sbjct: 195 KKIAVMTSGGDSPGMNAVVRAVARIAIHRGCDAFAIYEGYEGLVQGGDMIKQLQWGDV 252
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 27.1 bits (57), Expect = 0.64
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 6 TKNNLN*LFIIEDYNILITTMDGSATQKFIGRGSHKGKGLAVFTSGGDSQGMN 164
+KN N +F ++DY +L T D S +K S + + V+TS +G +
Sbjct: 528 SKNLPNQIFAVKDYKVLPLTGDNSIFEKI----SQEANSIFVYTSETKVEGFS 576
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 27.1 bits (57), Expect = 0.64
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 262 LSPPSTMPWYPSRIKYTLHPKYMPIR 185
+ PP+ +PWYP + Y + + IR
Sbjct: 95 IPPPTVLPWYPDGLAYIVDAQKDVIR 120
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 26.2 bits (55), Expect = 1.1
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 102 GSHKGKGLAVFTSGGDSQGMNAAVRSVVRMG-IYLGCKV--YFIREGYQGMVDGGDNI 266
GS KG+ V G +++ N+A+R VR+ I G KV + +G VD D +
Sbjct: 43 GSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEV 100
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 26.2 bits (55), Expect = 1.1
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 102 GSHKGKGLAVFTSGGDSQGMNAAVRSVVRMG-IYLGCKV--YFIREGYQGMVDGGDNI 266
GS KG+ V G +++ N+A+R VR+ I G KV + +G VD D +
Sbjct: 43 GSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEV 100
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 24.6 bits (51), Expect = 3.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 289 TEDQFASSMLSPPSTMPWYPSRIKYTLH 206
TE +SSML PPS+ P + S + +LH
Sbjct: 87 TEIDSSSSMLPPPSSDP-FSSPLSSSLH 113
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 23.8 bits (49), Expect = 5.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 20 KLAIYY*GLQYFDYHDGRVSYSEIYWP 100
KLA + G Y DY D + E+Y P
Sbjct: 155 KLAAIFGGQGYEDYFDELIELYEVYAP 181
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 23.8 bits (49), Expect = 5.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 90 FIGRGSHKGKGLAVFTSGGDSQGMNAAVRSV 182
F G +G+GL V T+ GDS + A V
Sbjct: 244 FASSGVKRGEGLMVVTATGDSTFVGRAASLV 274
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 23.4 bits (48), Expect = 7.9
Identities = 9/37 (24%), Positives = 19/37 (51%)
Frame = -2
Query: 265 MLSPPSTMPWYPSRIKYTLHPKYMPIRTTDRTAAFIP 155
+L ++M Y + K + P Y P++ + ++F P
Sbjct: 364 VLKEETSMVLYDEQCKISESPSYSPVKLAKKFSSFNP 400
>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 386
Score = 23.4 bits (48), Expect = 7.9
Identities = 6/18 (33%), Positives = 14/18 (77%)
Frame = +3
Query: 243 MVDGGDNIEEANWSSVSS 296
M+DGG++ +E +W ++ +
Sbjct: 333 MLDGGESTDEEDWRAIGT 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,227,463
Number of Sequences: 5004
Number of extensions: 23117
Number of successful extensions: 71
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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