Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31245
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    29   0.67 
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   4.7  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    26   4.7  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    25   8.3  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    25   8.3  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    25   8.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.3  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   8.3  

>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 282 RSEATKTFEDETRRIRADTAALIHRARSVVPRAKSLSPLDTIYSYSYGEPIPYRFSNDAY 461
           ++  +K +ED T    A +    +  R  + R+++L P   +  Y YG+P P R S  A 
Sbjct: 178 KNHLSKIYEDHTSEKGASSVISSNITRQGIKRSRTL-PW-AVDPYRYGDPDPKRTSTSAD 235

Query: 462 IAK 470
           I++
Sbjct: 236 ISQ 238


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 397 STPSTHIHTANRSRTVSAMTLTLLSFWCPYAASRI--ASTIFPSITSQPRSSLDAATS 564
           STPST I T+N S  VS  T + L    P  +S +   ST  P++T     S  + TS
Sbjct: 538 STPSTTIPTSNSS--VSLQTSSSLIISSPIISSSLTATSTSTPALTHSITPSNTSYTS 593


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 373 RAPSPYHHSTPSTHIHTANRSRTVSA-MTLTLLSFWCPYAASRIASTIFPSITSQPRS 543
           RA S    S+P    H+ + S+++++ M +   S    YAA+ + ST F  +T   R+
Sbjct: 202 RAKSTESTSSPELS-HSLDSSKSIASDMPIHRASHTTGYAAASLTSTSFTPVTKNERA 258


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/56 (21%), Positives = 28/56 (50%)
 Frame = +3

Query: 309 DETRRIRADTAALIHRARSVVPRAKSLSPLDTIYSYSYGEPIPYRFSNDAYIAKLL 476
           + T  ++ +T+ +++  +  +  + S SP+     +S   P+P  F N+ Y   +L
Sbjct: 360 ENTYVLKEETSMVLYDEQCKISESPSYSPVKLAKKFSSFNPLP--FENEGYTLDVL 413


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 397 STPSTHIHTANRSRTVSAMTL 459
           S P THI+T+ R R+V+  +L
Sbjct: 47  SPPKTHIYTSPRKRSVNLKSL 67


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = +1

Query: 394 HSTPSTHIHTANRSRTVSAMTLTLLSFWCPYAASRIASTIFPSITSQPRSSLDAATSRAC 573
           H  P   I     +     M L  +S         IA  ++ +  S+P++ L AAT  +C
Sbjct: 276 HKVPEGFITFLASTVDTGFMVLVAMSIHNIVEGFTIAYPLYLAWKSRPKAFLTAATLSSC 335

Query: 574 TTPV 585
           + P+
Sbjct: 336 SLPL 339


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 25/110 (22%), Positives = 40/110 (36%)
 Frame = +1

Query: 256 PSLPSMTSCAPKQPRLSKMRPVEFAPTLRL*STGLALWCRAPSPYHHSTPSTHIHTANRS 435
           P+  S TS  P  P  +       +P L   ST        P   + +TP T       S
Sbjct: 361 PTSTSSTS-TPPPPASTSSTGTSSSPLLST-STSCTTSTSIPPTGNSTTPVTPTVPPTSS 418

Query: 436 RTVSAMTLTLLSFWCPYAASRIASTIFPSITSQPRSSLDAATSRACTTPV 585
            T    T    S   PY ++ + ST   +      +S+   ++   +TP+
Sbjct: 419 STPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPL 468


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 262 LPSMTSCAPKQPRLSKMRPVEFAPTLRL*STGLA 363
           LP +T+   K+   +K RPV F P   + + G A
Sbjct: 334 LPKLTAAIDKKSVQAKARPVHFEPPKAVAAEGYA 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,357,173
Number of Sequences: 5004
Number of extensions: 47384
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)