Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31245
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0828 - 23502276-23503472,23503568-23504002,23504097-235042... 32 0.39
03_06_0448 - 34005581-34005655,34005735-34005830,34006669-340076... 32 0.39
07_01_0860 - 7142913-7144895 31 0.69
06_03_0147 + 17236158-17236808 31 0.69
04_04_1633 + 34928139-34928511,34928700-34928774,34929385-349294... 29 2.1
03_05_0257 + 22439915-22440275,22440280-22440627,22440962-224410... 29 2.1
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 2.1
08_02_0463 + 17450935-17451180 29 2.8
02_01_0390 - 2824585-2825307,2828206-2828460,2829006-2829107,282... 29 3.7
12_01_0598 + 4890006-4890290,4890901-4890987 28 4.8
01_06_0187 - 27296834-27296980,27297567-27297731,27297820-272979... 28 4.8
05_03_0029 - 7525408-7525634,7526253-7526457 28 6.4
01_06_0560 + 30244814-30244871,30244979-30245140,30245725-302457... 28 6.4
09_02_0204 - 5768596-5768793,5769857-5770006,5770407-5770583 27 8.5
07_03_0082 - 13222635-13223350,13223368-13223928,13224095-132248... 27 8.5
02_04_0499 - 23485707-23485822,23485899-23486112,23486464-234865... 27 8.5
>12_02_0828 -
23502276-23503472,23503568-23504002,23504097-23504213,
23505330-23505396,23505685-23505725,23506161-23506237,
23506699-23506945
Length = 726
Score = 31.9 bits (69), Expect = 0.39
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Frame = +1
Query: 391 HHSTPSTHIHTANRSRTVSAMTLTLLSFWC------PYAASRIASTIFPSITSQPRSSLD 552
HH+ P+T + + T + + +L+S WC P S + P+ +S R+++D
Sbjct: 343 HHTCPTTQQKMSTSALTPNYVLRSLISQWCETNGMEPPKRSTQPNKPTPACSSSERANID 402
Query: 553 AATSRACT 576
A S+ C+
Sbjct: 403 ALLSKLCS 410
>03_06_0448 - 34005581-34005655,34005735-34005830,34006669-34007616,
34007684-34007851,34007908-34008099,34008164-34008346,
34008414-34008590,34008667-34012074
Length = 1748
Score = 31.9 bits (69), Expect = 0.39
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 161 RVRHESSYRPRCRTVNQFSRHAVGGPVGPTRRVEVTL 51
R R E+S + + +SRHAV PV TR ++V L
Sbjct: 1579 RTRSETSNKLHINSAGYYSRHAVPEPVSVTREIKVPL 1615
>07_01_0860 - 7142913-7144895
Length = 660
Score = 31.1 bits (67), Expect = 0.69
Identities = 24/77 (31%), Positives = 31/77 (40%)
Frame = +1
Query: 361 ALWCRAPSPYHHSTPSTHIHTANRSRTVSAMTLTLLSFWCPYAASRIASTIFPSITSQPR 540
AL CR PY H P+ A ++ T AS +ST P + S P
Sbjct: 583 ALACRCVRPYKHERPAMGEVLAELKAMLADYT-ARGGGADRSEASTSSSTATPDLASLPS 641
Query: 541 SSLDAATSRACTTPVRR 591
+S A + A TP RR
Sbjct: 642 TSSSVANTEAMATPPRR 658
>06_03_0147 + 17236158-17236808
Length = 216
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 320 SNSRRHCGFDPPGSLCGAARQVLITTRHHL 409
S+ +RH G PG L A R L+T HHL
Sbjct: 43 SHRQRHGGMPSPGDLAAALRGRLLTEDHHL 72
>04_04_1633 +
34928139-34928511,34928700-34928774,34929385-34929483,
34929736-34929908,34929990-34930066,34930182-34930301,
34930385-34930472,34930610-34930716,34930814-34930871
Length = 389
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 202 PWSSVSWTESLTDAA-QHWPSLP 267
PW VSW ES + QH+ SLP
Sbjct: 17 PWDDVSWAESTSSTVLQHYNSLP 39
>03_05_0257 +
22439915-22440275,22440280-22440627,22440962-22441015,
22441390-22441763
Length = 378
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 381 WRAAPQSEPGGSKPQCRREFDGSHLRKSWLLRS 283
WR P P P+ RRE DG R+ W RS
Sbjct: 11 WRPVPHEAPPLPLPRLRRE-DGQEKRRRWPFRS 42
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 184 GSGSAHPWSSVSWTESLTDAAQHWPSLPSMTS 279
G G+A WSS S + T SLPSMTS
Sbjct: 264 GGGAAEAWSSASASSPPTTTTASRRSLPSMTS 295
>08_02_0463 + 17450935-17451180
Length = 81
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -2
Query: 311 IFESLGCFGAQEVIDGRDGQCWAASVSDSVQLTEDHG-WADPDPHHVMRHIR 159
+F SL + +ID +DG AAS V EDHG WA P V ++
Sbjct: 6 LFLSLALSLSLSLIDLKDGWQTAASPPRRVDRKEDHGHWAAPSEDAVTNDVQ 57
>02_01_0390 -
2824585-2825307,2828206-2828460,2829006-2829107,
2829386-2829598,2829688-2829897
Length = 500
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +3
Query: 309 DETRRIRADTAALIHRARSVVPRAKSLSPLDTIYSYSYGEPIPYRFSNDA 458
DE AD ++ ARS +P+ T Y YGE P R + A
Sbjct: 352 DEAAPAAADAGEVLEFARSQADYILGTNPMATSYLVGYGEAYPRRVHHRA 401
>12_01_0598 + 4890006-4890290,4890901-4890987
Length = 123
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 423 RMNMSRWCRVVIRTWR-AAPQSEPGGSKPQCRREFDGSHLR 304
R+++ V+ +WR A + PGGS+P E G+ R
Sbjct: 47 RLDVDERMGTVLASWRKTAGRGRPGGSRPAAEAEIQGADPR 87
>01_06_0187 -
27296834-27296980,27297567-27297731,27297820-27297918,
27299276-27299616,27299824-27300643
Length = 523
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/76 (23%), Positives = 27/76 (35%)
Frame = +1
Query: 193 SAHPWSSVSWTESLTDAAQHWPSLPSMTSCAPKQPRLSKMRPVEFAPTLRL*STGLALWC 372
+++ W S S + D W + M + + R V + R G + C
Sbjct: 244 TSNTWISQS-ANGIADGIPQWEYVNGMNNAPGRFSRSGMTETVN--GSFREYQNGPSTLC 300
Query: 373 RAPSPYHHSTPSTHIH 420
R P PY H H H
Sbjct: 301 RGPLPYFHQHAGMHAH 316
>05_03_0029 - 7525408-7525634,7526253-7526457
Length = 143
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -1
Query: 444 NGTGSVRRMNMSRWCRVVIRTWRAAPQSEPGGSKPQCRREFDGSHLR 304
NG G+ + + RW V++ R S GG K C DG + R
Sbjct: 65 NGDGANGSVRVERWAPVLVPAMRGMTNS-GGGGKAMCGLSDDGGNGR 110
>01_06_0560 +
30244814-30244871,30244979-30245140,30245725-30245786,
30246170-30246214,30246358-30246363,30246424-30246624,
30246735-30248024
Length = 607
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/73 (23%), Positives = 28/73 (38%)
Frame = -2
Query: 371 HHRASPVDQSRSVGANSTGLIFESLGCFGAQEVIDGRDGQCWAASVSDSVQLTEDHGWAD 192
H + + + V TG SL C + DG+ W + + L D ++
Sbjct: 335 HGTTATICSPQPVDGLPTGSFLISLDCGLFHTTVVSSDGEVWCWGMERGLGLCPDASFSG 394
Query: 191 PDPHHVMRHIRVR 153
D +R IRV+
Sbjct: 395 VDSGDALRPIRVQ 407
>09_02_0204 - 5768596-5768793,5769857-5770006,5770407-5770583
Length = 174
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -2
Query: 233 SDSVQLTEDHGWADPDPHHVMRHIRVRHESS--YRPRCRTVNQFS 105
+D + + HGW + + +RH R H S ++ R R V Q S
Sbjct: 93 TDDLSHSTGHGWTTREKENSIRHYRRLHVSMVLHQDRLRRVRQMS 137
>07_03_0082 -
13222635-13223350,13223368-13223928,13224095-13224839,
13226548-13226638,13227330-13227342,13227633-13227689,
13229170-13229260,13229444-13229476,13229588-13230085
Length = 934
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 354 GGSKPQCRREFDGSHLRKSWLLRSARSHRRQR 259
G K RRE + S++ ++W LRS +H+ R
Sbjct: 496 GNQKLGPRREEESSNMSRAWRLRSDMTHKSLR 527
>02_04_0499 -
23485707-23485822,23485899-23486112,23486464-23486511,
23486609-23486695,23486808-23486945,23487159-23487389,
23488524-23489504
Length = 604
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 267 VDDFLRSEATKTFEDETRRIRADTAALIHRARSVVPRAKSLSPLDTI 407
VD + R+ E TR A +HRA + V R +S+ PL+ +
Sbjct: 87 VDPWTRASLVAWMEGITRGHAGLAAGTLHRAVAYVDRYQSVRPLEAV 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,033,803
Number of Sequences: 37544
Number of extensions: 392041
Number of successful extensions: 1346
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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