Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31245
(591 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9853| Best HMM Match : Lipase_3 (HMM E-Value=0.00075) 32 0.40
SB_20360| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19) 30 1.6
SB_20777| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_16665| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.10001e-40) 28 5.0
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 28 5.0
SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14) 28 6.6
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_8274| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_55864| Best HMM Match : Sad1_UNC (HMM E-Value=6.9e-25) 27 8.7
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23) 27 8.7
SB_33520| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-09) 27 8.7
SB_6208| Best HMM Match : 7tm_1 (HMM E-Value=0) 27 8.7
>SB_9853| Best HMM Match : Lipase_3 (HMM E-Value=0.00075)
Length = 593
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +1
Query: 388 YHHSTPSTHIHT-ANRSRTVSAMTLTLLSFWCPYAASRIASTIFPSITSQPRSSLDAATS 564
Y+H T S ++H A R + W A + ST+FP I PR L A S
Sbjct: 389 YYHVTDSNNVHVIAIRGANTPDELIHYAKIWNEIAVIQSLSTLFPIIHQVPRDYLSAYVS 448
>SB_20360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 358 LALWCRAPSPYHHSTPSTHIHTANRSRTVSAMTLTLLSFWC--PYAA 492
LA+W +A +++P + N TV+ +TLLSF C PYAA
Sbjct: 171 LAIWIKAK----YASPFANNRPVNNKLTVTLFLITLLSFLCYLPYAA 213
>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 30.3 bits (65), Expect = 1.2
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Frame = -2
Query: 359 SPVDQSRSVGANSTGLIFESLGCFGAQEVIDGRDG--QCWAASVSDSVQLTEDHGWADPD 186
SP Q+ ++G+ S + E++ G DGRD + W DS + +E W P
Sbjct: 581 SPPRQAEAIGS-SRDVGKETVRDGGRDSGRDGRDTGRESWRDGARDSGRDSERKRWPRPP 639
Query: 185 PHHVMRHIRVRHESSYRPRCRTVNQFSRHA 96
RH SS P +TV + S +A
Sbjct: 640 SPEPARHSHPDVTSSQSPALKTVKRPSDNA 669
>SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = +3
Query: 213 RELDRIAYRRRPALAISAVDDFLRSEATKTFEDETRRIRADTAALIHRARSVVPRAKSLS 392
+ ++R RRP+L V F + + EDE +RA L HR RS K+LS
Sbjct: 90 KRMERKKKGRRPSLFRRFVGAFRNNPSNSEAEDEESELRAPPDYLSHRRRS-----KTLS 144
Query: 393 PLDT 404
L T
Sbjct: 145 SLPT 148
>SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)
Length = 975
Score = 29.9 bits (64), Expect = 1.6
Identities = 25/77 (32%), Positives = 34/77 (44%)
Frame = +1
Query: 199 HPWSSVSWTESLTDAAQHWPSLPSMTSCAPKQPRLSKMRPVEFAPTLRL*STGLALWCRA 378
H SS + T A QH+ + S PR + + E A T+ L S+G L+CRA
Sbjct: 10 HELSSKKYFRFFTVALQHYGHISS--------PRFAVVTSEEVAKTIGLHSSGNVLFCRA 61
Query: 379 PSPYHHSTPSTHIHTAN 429
P PS I + N
Sbjct: 62 FKPPLVYHPSKGITSCN 78
>SB_20777| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -2
Query: 359 SPVDQSRSVGANSTGLIFESLGCFGAQEVIDGRDGQCWAASVSDSVQLTED 207
S D +GAN T + S C G Q I+G D A V+DS + +D
Sbjct: 194 SEEDNGSLLGAN-TEICHSSCHCQGCQSQIEGDDTPVAAREVADSCETIQD 243
>SB_16665| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.10001e-40)
Length = 935
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 373 RAPSPYHHSTPSTH-IHTANRSRTVSAMTLTLLSFWCPYAASRIASTIF 516
R P + H + + +HT S + TLTLL + P + S + ST++
Sbjct: 296 RVPGSHSHLFSTVYQVHTHTYSLPCTRFTLTLLLYRVPGSHSHLFSTVY 344
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 373 RAPSPYHHSTPSTH-IHTANRSRTVSAMTLTLLSFWCPYAASRIASTIF 516
R P + H + + +HT S + TLTL+ + P + S + ST++
Sbjct: 261 RVPGSHSHLFSTVYQVHTHTYSLPCTRFTLTLILYRVPGSHSHLFSTVY 309
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 28.3 bits (60), Expect = 5.0
Identities = 25/77 (32%), Positives = 34/77 (44%)
Frame = +1
Query: 358 LALWCRAPSPYHHSTPSTHIHTANRSRTVSAMTLTLLSFWCPYAASRIASTIFPSITSQP 537
+A+ C A P +TPS + T +R T + +T S SR+ +T PS
Sbjct: 1162 MAITCTAGPPLAVTTPSRLVTTLSRLVTTPSRLVTTPSRLVT-TPSRLVTT--PSRLVTT 1218
Query: 538 RSSLDAATSRACTTPVR 588
S L SR TTP R
Sbjct: 1219 LSRLVTTPSRLVTTPSR 1235
>SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 908
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 261 SAVDDFLRSEATKTFEDETRRIRADTAALIHRARSVVPRAKSLSPLDTIYSYSYGEP 431
+ +D FL++ A + ADTAA + A V +K + L T+ S ++ P
Sbjct: 661 TVLDSFLKASAAGGLGSVKAEVLADTAAALASANVQVVSSKVIGRLHTLISKTFISP 717
>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
Length = 1089
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 253 WPSLPSMTSCAPKQPRLSKMRPVEFAPT 336
W L +PK PR+ ++ V+FAPT
Sbjct: 465 WDQLEENDVASPKSPRVDQVVRVQFAPT 492
>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Frame = -2
Query: 362 ASPVDQSRSVGANSTGLIFESLGCFGAQEVIDGRDGQCWAASVSDSVQLTEDHGWADP-- 189
A P + + G T ++ + G + + + G+C S ++ L+ W D
Sbjct: 407 AKPAVTAANTGNMDTPVVNDR-GMYSCPKRMQTGPGECNPPSPKEANDLSRVKQWVDQLC 465
Query: 188 DPHHVMRHIRVRHESSYRPRCR 123
H + R +H SYR CR
Sbjct: 466 AAHELETVTRSKHRKSYRHACR 487
>SB_8274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 253 WPSLPSMTSCAPKQPRLSKMRPVEFAPT 336
W L +PK PR+ ++ V+FAPT
Sbjct: 164 WDQLEENDVASPKSPRVDQVVRVQFAPT 191
>SB_55864| Best HMM Match : Sad1_UNC (HMM E-Value=6.9e-25)
Length = 526
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 269 DGRDGQCWAASVSDSVQLTEDHGWADPD 186
D + GQCWA + + GWADP+
Sbjct: 434 DNKPGQCWAFQGQQGYVVIK--GWADPE 459
>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
Length = 434
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/66 (27%), Positives = 25/66 (37%)
Frame = +1
Query: 379 PSPYHHSTPSTHIHTANRSRTVSAMTLTLLSFWCPYAASRIASTIFPSITSQPRSSLDAA 558
P H STP+TH H + S + + S PY T P I ++
Sbjct: 142 PHITHASTPTTHPHITHASTPTTHPHIAHASTTHPYITYASTPTTHPHIPHASTTTTHPY 201
Query: 559 TSRACT 576
+RA T
Sbjct: 202 IARAST 207
>SB_33520| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-09)
Length = 317
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 358 LALWCRAPSPYHHSTPSTHIHTANRSRTVSAMTLTLLSFWC--PYAASRI 501
+A+W + +++S+P+ +N T + +T+LSF C P AA I
Sbjct: 182 MAIWIKLK--FYNSSPNARFARSNNKLTQTLFIVTVLSFLCYLPMAAYTI 229
>SB_6208| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 559
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +1
Query: 352 TGLALWCRAPSPYHHSTPSTHIHTANRSRTVSAMTLTLL--SFWCPYAASRIASTIF 516
TGL LW R P I ++ R T+ +T+ ++ W P+ + S +
Sbjct: 368 TGLKLWSRKPPGQRSLQAHKKIQSSTRRATIMLITVVVVFAVCWFPFQIRELLSVFY 424
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,986,268
Number of Sequences: 59808
Number of extensions: 408677
Number of successful extensions: 1171
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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