Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31245
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          25   0.56 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   1.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.0  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 424 ANRSRTVSAMTLTLLSFWCPYAASRIASTIF 516
           A  ++ V+ M    L  W PYAA  IA+  F
Sbjct: 107 AKITKMVALMITAFLLAWSPYAALAIAAQYF 137


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 184 GSGSAHPWSSVSWTESLTDAA 246
           G  S+H   S SWT+   DAA
Sbjct: 399 GQSSSHHHGSKSWTQEDMDAA 419


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 12/58 (20%), Positives = 25/58 (43%)
 Frame = +1

Query: 415 IHTANRSRTVSAMTLTLLSFWCPYAASRIASTIFPSITSQPRSSLDAATSRACTTPVR 588
           ++  N +  +S  T  +  +  P  +     +++P  T+ P+S     T R   +P R
Sbjct: 363 LYQYNFNIIISEPTERISPYGYPIGSGGSFPSLYPMATTSPQSQSTIQTLRPQVSPDR 420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,809
Number of Sequences: 438
Number of extensions: 3646
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)