Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31245
(591 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran... 32 0.25
At3g60160.1 68416.m06717 ABC transporter family protein similar ... 31 0.76
At5g63420.1 68418.m07962 metallo-beta-lactamase family protein 30 1.0
At1g23330.1 68414.m02917 expressed protein 30 1.3
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha... 29 3.1
At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family ... 28 5.4
At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ... 27 7.1
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ... 27 7.1
At4g39860.2 68417.m05648 expressed protein 27 9.4
At4g39860.1 68417.m05647 expressed protein 27 9.4
At2g30400.1 68415.m03702 ovate family protein 57% similar to ova... 27 9.4
At2g22830.1 68415.m02711 squalene monooxygenase, putative / squa... 27 9.4
At1g48560.1 68414.m05430 expressed protein 27 9.4
At1g06350.1 68414.m00671 fatty acid desaturase family protein si... 27 9.4
>At3g60970.1 68416.m06823 ABC transporter family protein ABC
transporter-like proteins
Length = 1037
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 373 RAPSPYHHSTPSTHI-HTANRSRTVSAMTLTLLSFWCPYAASRIASTIF 516
RAP Y STP+ I + A+ ++V + + + WC ++ +I TIF
Sbjct: 566 RAPMSYFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTIF 614
>At3g60160.1 68416.m06717 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]
Length = 1490
Score = 30.7 bits (66), Expect = 0.76
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 373 RAPSPYHHSTPSTHI-HTANRSRTVSAMTLTLLSFWCPYAASRIASTIF 516
RAP + STP+ I + A+ ++V + + + WC ++ +I TIF
Sbjct: 1019 RAPMSFFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTIF 1067
>At5g63420.1 68418.m07962 metallo-beta-lactamase family protein
Length = 911
Score = 30.3 bits (65), Expect = 1.0
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +1
Query: 394 HSTPSTHIHTANRSRTVSAMTLTLLSFWCPYA-----ASRIASTIFPSITSQPRSSLDAA 558
H++ S + + T S M CPY +SRI ST+ S+TS P S
Sbjct: 13 HASSSIYSDVRRPATTPSKMAAFSALSLCPYTFTFRQSSRIKSTVSCSVTSAPAS----G 68
Query: 559 TSRACTTPVRR 591
TS + TP RR
Sbjct: 69 TSSSSKTPRRR 79
>At1g23330.1 68414.m02917 expressed protein
Length = 471
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -1
Query: 168 AHQGTSRVELP-TEMSDGKSVQPSRCRWTCRADASCRSHSRIPWLMLVLSFGF 13
A GT+R + + DGKS++P C+ IPWL +FGF
Sbjct: 206 ALNGTTRTYIDGIQPEDGKSLKPISLLQICKLGVIMYDWIDIPWLKSYYNFGF 258
>At2g17930.1 68415.m02076 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF02259 FAT domain, PF00454
Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
domain
Length = 3795
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 571 THARLPRPVNFLADS**KERLWMLSATLRRGTKSLAM 461
THA LPRP F ++ +W S L+ G LA+
Sbjct: 450 THAHLPRPQGFKGMR--EDEVWKASGVLKSGVHCLAL 484
>At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family
protein / snRNP family protein contains similarity to
U4/U6 small nuclear ribonucleoprotein hPrp3 [Homo
sapiens] gi|2708307|gb|AAC51926
Length = 786
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 184 GSGSAHPWSSVSWTESLTDAAQHWPSLPSMTSCAPKQPRLSKMRPV 321
GSG+ +P S V T A + S+PS S AP Q L+K+ +
Sbjct: 147 GSGATNPTSGV------TMGASTYSSIPSEASAAPSQTLLTKVSSI 186
>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 848
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 240 RRPALAISAVDDFLRSEATKTFEDETRRIRADT 338
RRP + VDD R E + E+E + A+T
Sbjct: 120 RRPVVKFKPVDDHDRIEGREAAEEEDNNVEAET 152
>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 848
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 240 RRPALAISAVDDFLRSEATKTFEDETRRIRADT 338
RRP + VDD R E + E+E + A+T
Sbjct: 120 RRPVVKFKPVDDHDRIEGREAAEEEDNNVEAET 152
>At4g39860.2 68417.m05648 expressed protein
Length = 298
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 358 LALWCRAPSPYHHSTPS 408
L W P P HHSTPS
Sbjct: 17 LLSWSETPPPPHHSTPS 33
>At4g39860.1 68417.m05647 expressed protein
Length = 299
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 358 LALWCRAPSPYHHSTPS 408
L W P P HHSTPS
Sbjct: 17 LLSWSETPPPPHHSTPS 33
>At2g30400.1 68415.m03702 ovate family protein 57% similar to ovate
protein (GI:23429649) [Lycopersicon esculentum];
contains TIGRFAM TIGR01568 : uncharacterized
plant-specific domain TIGR01568
Length = 320
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +1
Query: 217 SWTESLTDAAQHWPSLPSMTSCAPKQPRLSKMRPV-EFAPTLRL*STGLALWCRAPSPYH 393
+W L D +H S P + + SK +P + P S L A +P H
Sbjct: 15 AWFHKLKDVTKH--SKPKNKASSSSSNTCSKKKPSSDSLPQHSYFSNSLV----ANNPPH 68
Query: 394 HSTPSTHIHTANRSR 438
H++P +HT S+
Sbjct: 69 HNSPRNSLHTKKMSK 83
>At2g22830.1 68415.m02711 squalene monooxygenase, putative /
squalene epoxidase, putative similar to SP|O65404 (SE
1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
Length = 585
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 48 YESDFYTTRRPYRSTYSVTAELIYR 122
Y FYT R+P ST + A+ +Y+
Sbjct: 451 YIESFYTLRKPVASTINTLADALYK 475
>At1g48560.1 68414.m05430 expressed protein
Length = 643
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 526 TSQPRSSLDAATSRACTTPVRR 591
T PR+S +++T +AC T VRR
Sbjct: 236 TRSPRTSSNSSTMKACETMVRR 257
>At1g06350.1 68414.m00671 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 300
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 172 ITW*GSGSAHPWSSVSWTESLTDAAQHWPSLPSM 273
+TW + + H W S SW T W SL +M
Sbjct: 209 VTWLVNSACHIWGSRSWNTKDTSRNVWWLSLFTM 242
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,812,801
Number of Sequences: 28952
Number of extensions: 270036
Number of successful extensions: 823
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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