Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31244
         (355 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   2.8  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   3.7  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    20   6.5  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    20   6.5  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = +2

Query: 119 WQRQCRTRKGYFQFSRPWYSTKIKSKRALKALPLHWAVSALPLVVPSP 262
           W +  R +    + +  W    + +  A  A   H A ++LPL  P P
Sbjct: 118 WFQNRRMKDKRQRMAIAWPYAAVYTDPAFAASIFHAAATSLPLHYPPP 165


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 179 TKIKSKRALKALPLHWAVSALPLVVPSPQ 265
           T++ +      LP   A S LPL+VP PQ
Sbjct: 177 TRLANGDIALVLPTQGA-SPLPLLVPIPQ 204


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 184 LRTIPWSAKLEISFTCPALSLPKLSSAESP 95
           ++ I    K  +SF    L+ PKL   + P
Sbjct: 217 IKGISGGEKKRLSFAAEVLTNPKLMFCDEP 246



 Score = 19.8 bits (39), Expect = 8.6
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -1

Query: 70  CPNPESWCPNPGIMV 26
           CPN +  CP  G ++
Sbjct: 614 CPNADLPCPKDGHVI 628


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 184 LRTIPWSAKLEISFTCPALSLPKLSSAESP 95
           ++ I    K  +SF    L+ PKL   + P
Sbjct: 217 IKGISGGEKKRLSFAAEVLTNPKLMFCDEP 246



 Score = 19.8 bits (39), Expect = 8.6
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -1

Query: 70  CPNPESWCPNPGIMV 26
           CPN +  CP  G ++
Sbjct: 614 CPNADLPCPKDGHVI 628


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,168
Number of Sequences: 336
Number of extensions: 1570
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7087595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)