Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31244
         (355 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   0.85 
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    26   1.5  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   3.4  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   3.4  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    25   4.5  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    24   7.9  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 0.85
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 251  PPMAVPIPPNEVAMPSRP 198
            PPM+VP PP+   MP+ P
Sbjct: 1710 PPMSVPPPPSAPPMPAGP 1727


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = -1

Query: 145 FTCP--ALSLPKLSSA--ESPKLPNPESWCPNPESWCPNPGIMVSKP 17
           +T P  A+ +P L  A  +S   P PE++  NP+ W PN G+    P
Sbjct: 403 YTVPKDAMVIPTLYGALHDSKVYPEPETF--NPDRWAPN-GLAEQSP 446


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 284 LRPFAIFEVRAPPMA-VPIPPNEVAMPSRPFSILSSYYTMV 165
           L+P++ F++    M+ +  PP +  +P R   I+  YY +V
Sbjct: 307 LQPYSDFQIILDGMSRLLYPPMQSTIPKRSSLIMFDYYPLV 347


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 257 RAPPMAVPIPPNEVAMPSRPFS 192
           R P M +P PP++  +PS P S
Sbjct: 24  RQPSMNLPTPPHDDGLPSIPRS 45


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -1

Query: 217 WQCLQGPFRFYLRTIPWSAKLEISFTCPALSLPKLSSAESPKLPNPESWCPNPESW 50
           W+   G F FYL + P++ K   + T  A+SL   ++  +  L    S+     SW
Sbjct: 205 WKIGYGRFSFYLNSSPFNVKEHAAITI-AVSLTSSTAYATNILSAQTSFYKQNLSW 259


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 70  CPNPESWCPNPGIMVSKPG 14
           CP P + CP+P  +  KPG
Sbjct: 371 CP-PNAICPSPNYVECKPG 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,441,435
Number of Sequences: 5004
Number of extensions: 27512
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)