Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31244
         (355 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038610-2|AAB92034.1|  457|Caenorhabditis elegans Hypothetical ...    29   0.93 
U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile (un...    28   1.6  
AL132951-1|CAC44310.2|  707|Caenorhabditis elegans Hypothetical ...    27   2.8  
U29488-7|AAA68771.1|  221|Caenorhabditis elegans Hypothetical pr...    27   3.8  
U88170-4|AAB42245.2|  425|Caenorhabditis elegans Hypothetical pr...    26   6.6  
U64857-10|AAC25860.1|  265|Caenorhabditis elegans Hypothetical p...    26   6.6  
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    26   6.6  
AL161712-19|CAC70143.2|  261|Caenorhabditis elegans Hypothetical...    26   6.6  
AF038615-1|AAB94149.3|  532|Caenorhabditis elegans Hypothetical ...    24   7.4  
Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical pr...    26   8.7  
L36965-1|AAC37216.1|  192|Caenorhabditis elegans guanine nucleot...    26   8.7  
AL132952-3|CAB63379.1|  192|Caenorhabditis elegans Hypothetical ...    26   8.7  

>AF038610-2|AAB92034.1|  457|Caenorhabditis elegans Hypothetical
           protein F09D12.2 protein.
          Length = 457

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 204 KALFDFIFVLYHGLLNWKYP 145
           KA+ D +FVL H L++W YP
Sbjct: 286 KAIADKLFVLAHELMHWVYP 305


>U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile
           (unfertilizable) protein2 protein.
          Length = 548

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = -2

Query: 129 CLCQNCRARSHQSYRIRSRGVQIRSHGVQIPESWCPN 19
           C CQ C    H +Y        ++   V  P S CPN
Sbjct: 491 CSCQECLGTHHDTYMCSESNRCLKRGEVCSPYSMCPN 527


>AL132951-1|CAC44310.2|  707|Caenorhabditis elegans Hypothetical
           protein Y67H2A.1 protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = -1

Query: 229 RPMKWQCLQGPFRF-YLRTIPWSAKLEISFTCPALSLP-KLSSAESPKLPNPESWCPNPE 56
           R  K   ++ PF F ++ T+    + E +  C  L+ P  L S  S +L   ESWCP+ +
Sbjct: 293 RIQKQIAVKNPFIFKHVSTLRGMDQFEDAGPCVVLATPGMLQSGFSRELF--ESWCPDTK 350

Query: 55  SWCPNPGIMV 26
           + C   G  V
Sbjct: 351 NGCIIAGYCV 360


>U29488-7|AAA68771.1|  221|Caenorhabditis elegans Hypothetical
           protein C56C10.3 protein.
          Length = 221

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 269 IFEVRAPPMAVPIPPNEVAMPSRPFS 192
           + + RAPP+ +P  PN +A+P+ P S
Sbjct: 177 LLDARAPPVTLPDTPN-IALPAVPAS 201


>U88170-4|AAB42245.2|  425|Caenorhabditis elegans Hypothetical
           protein C10G11.6 protein.
          Length = 425

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 278 PFAIFEVRAPP--MAVPIPPNEVAMPSRPFSILSSYYT 171
           P    +VR PP  +++P+PP  +  PS  F    S Y+
Sbjct: 171 PIVSPDVRRPPPSLSIPLPPMHIPPPSVYFISTPSIYS 208


>U64857-10|AAC25860.1|  265|Caenorhabditis elegans Hypothetical
           protein C37C3.3 protein.
          Length = 265

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -3

Query: 269 IFEVRAPPMAVPIPPNEVAMP-SRP 198
           + + RAPP+ +P  PN +A+P SRP
Sbjct: 225 LLDARAPPVTLPDTPN-IALPASRP 248


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
           potassium channelsprotein 2 protein.
          Length = 1564

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = -3

Query: 251 PPMAVPIPP--NEVAMPSRPFS 192
           PP+ +P PP  N V+ P RP S
Sbjct: 493 PPIEIPSPPPSNSVSSPRRPLS 514


>AL161712-19|CAC70143.2|  261|Caenorhabditis elegans Hypothetical
           protein Y66D12A.24 protein.
          Length = 261

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 254 APPMAVPIPPNEVAMPSRP 198
           APP A P PP E  +P +P
Sbjct: 56  APPSAPPPPPPEYCVPDQP 74


>AF038615-1|AAB94149.3|  532|Caenorhabditis elegans Hypothetical
           protein R02D3.3 protein.
          Length = 532

 Score = 23.8 bits (49), Expect(2) = 7.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 67  PNPESWCPNPGIMVSKPGVH 8
           P PE+WC + G +     VH
Sbjct: 441 PPPENWCQSAGDLAKVRDVH 460



 Score = 20.6 bits (41), Expect(2) = 7.4
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -1

Query: 103 ESPKLPNPESWC 68
           ++ ++P PE+WC
Sbjct: 436 DNNEVPPPENWC 447


>Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical
           protein C01G6.5 protein.
          Length = 952

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 124 LPKLSSAESPKLPNPESWCPNPESWCPNPGIMV 26
           LP+++S++S +  +  S  PNP S  P+P  +V
Sbjct: 597 LPRVTSSKSAQDVSTPSTTPNPVSRSPDPVALV 629


>L36965-1|AAC37216.1|  192|Caenorhabditis elegans guanine nucleotide
           regulatory proteinprotein.
          Length = 192

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -1

Query: 109 SAESP-KLPN-PESWCPNPESWCPNPGIMV 26
           S +SP  L N PE W P    +CPN  I++
Sbjct: 85  SIDSPDSLENIPEKWTPEVRHFCPNVPIIL 114


>AL132952-3|CAB63379.1|  192|Caenorhabditis elegans Hypothetical
           protein Y51H4A.3 protein.
          Length = 192

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -1

Query: 109 SAESP-KLPN-PESWCPNPESWCPNPGIMV 26
           S +SP  L N PE W P    +CPN  I++
Sbjct: 85  SIDSPDSLENIPEKWTPEVRHFCPNVPIIL 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,141,455
Number of Sequences: 27780
Number of extensions: 163313
Number of successful extensions: 550
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)