Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31244
         (355 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   3.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   3.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   5.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   5.7  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    20   9.9  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 121 PKLSSAESPKLPNPESWCPNPESWCPNPGIMV 26
           P L+S  +  + N    CP   SW  +  IMV
Sbjct: 229 PSLTSLNAYLIKNQTITCPIKVSWRADGQIMV 260


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 178 TIP-WSAKLEISFTCPALSLPKLSSAESPKLPNPESW 71
           T+P W   + ++ T    ++PK S  +SPKL    +W
Sbjct: 202 TLPKWKDGIPVTLT----TVPKHSKTKSPKLRPYPNW 234


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 158 TGNILYVSGIVFAKTVERGVTKATE 84
           TG+++Y  G +  +T+E+   +A E
Sbjct: 24  TGHLIYKCGGIDKRTIEKFEKEAQE 48


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 158 TGNILYVSGIVFAKTVERGVTKATE 84
           TG+++Y  G +  +T+E+   +A E
Sbjct: 24  TGHLIYKCGGIDKRTIEKFEKEAQE 48


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -3

Query: 275 FAIFEVRAPPMAVPIPPNEVAMPSRP 198
           + I  +   P+ VP+P +    P RP
Sbjct: 334 YNIINIEQIPVPVPVPIHCGNFPPRP 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,557
Number of Sequences: 438
Number of extensions: 2087
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)