Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31243
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz...    31   0.033
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    26   1.6  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   2.8  
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po...    25   2.8  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    25   3.8  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   3.8  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   3.8  

>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 338

 Score = 31.5 bits (68), Expect = 0.033
 Identities = 13/32 (40%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
 Frame = -2

Query: 235 INLGGAE-DATRELPSIARDLGLDIVLVQEQY 143
           +++GG + + TR++ ++A  LGLD VL+QE +
Sbjct: 71  VSIGGIQSNQTRQVAAVAAHLGLDCVLIQEDW 102


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = +2

Query: 143 ILFLYKNNIQAEIPCNGG*LPRRILCTTQIDLANTKSGPNIHTRPDLXSAPPHAGAPDS 319
           ++ +  N    E+P +G  L  R     +ID  N+    N+HT     S  P A    S
Sbjct: 253 LIAVNNNRPPVELPKSGDVLSNREWEAGKIDAMNSLIAQNLHTSASQVSLSPMASTASS 311


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 42   AAKWCRTAQGSTLLRIYTPALG-CAPHWAR 128
            A +W +T  G++ + IY P LG  AP+ +R
Sbjct: 2260 APRWLQTLWGTSNIGIYVPFLGKGAPYLSR 2289


>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 4   KSHPPMCTTVICVLLSGAEPRRGAPYCGYTHPP 102
           KS  P+ T ++  + + AE     PYC    PP
Sbjct: 135 KSDSPLATLILGAIQTQAEMLIQFPYCNAFQPP 167


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +3

Query: 54  CRTAQGSTLLRIYTPALGCAPHWARNPTMEYCSCTRTISRPRSRAMEGSSLVASSAPP 227
           CR + GST+L  Y P +        +  + +CS    I    +R +   S +  ++PP
Sbjct: 420 CRCSDGSTMLPAYCPII-------PSSEVNFCSIDNRIIAGMNRDLALDSDIIGNSPP 470


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 178 DPVQWRVAPSSHPLHHPD*FG 240
           DP+  R  PSSHPLH P   G
Sbjct: 477 DPLYTR--PSSHPLHPPPILG 495


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 45  QHTYNGSAHWGVGLI 1
           QH +NG AHW  G I
Sbjct: 239 QHIFNGLAHWIKGAI 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,642,857
Number of Sequences: 5004
Number of extensions: 37201
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)