Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31243
(320 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39408| Best HMM Match : Cadherin (HMM E-Value=0) 31 0.28
SB_50210| Best HMM Match : I-set (HMM E-Value=0.11) 29 0.64
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 29 0.84
SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.6
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15) 27 2.6
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 27 3.4
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.4
SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0) 26 5.9
SB_22536| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.9
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.9
SB_26709| Best HMM Match : CtnDOT_TraJ (HMM E-Value=8.8) 26 5.9
SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.9
SB_7580| Best HMM Match : Topoisom_bac (HMM E-Value=0) 26 7.9
>SB_39408| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2389
Score = 30.7 bits (66), Expect = 0.28
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 134 RVPSPMWSTPQGGCVYPQ*GAPLRGSAPLSSTHITVV 24
R+P+PM ++P G + P AP G +S+ HI V
Sbjct: 1140 RIPTPMLTSPDGSKLDPAKLAPHHGIVTISTCHIDAV 1176
>SB_50210| Best HMM Match : I-set (HMM E-Value=0.11)
Length = 348
Score = 29.5 bits (63), Expect = 0.64
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Frame = +3
Query: 42 AAKWCRTAQG-STLLRIYTPALGCAPHWARNPTM--EYCSCTRTISRPRSRAMEGSSLVA 212
+ K+C A+ S +L++Y C A P M +YC CTR +S+ + S +A
Sbjct: 64 SVKYCECARNVSQVLQVYAQ---CQSSIASVPAMSVKYCECTRNVSQVLRVCAQCQSSIA 120
Query: 213 SSAPPRLIWPIRSRGLISILDLIXEALLRMPARRTV 320
S + + +R + +L + + + + RT+
Sbjct: 121 SVPAMSVKYCKCARNVSQVLQVYAQCQSSIASVRTM 156
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 42 AAKWCRTAQG-STLLRIYTPALGCAPHWARNPTMEYCSCTRTISRPRSRAMEGSSLVAS 215
+ K+C+ A+ S +L++Y R +++YC C R +S+ + S +AS
Sbjct: 126 SVKYCKCARNVSQVLQVYAQCQSSIAS-VRTMSVKYCECARNVSQVLRVCAQCQSSIAS 183
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 29.1 bits (62), Expect = 0.84
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +3
Query: 42 AAKWCRTAQG-STLLRIYTPALGCAPHWARNPTM--EYCSCTRTISRPRSRAMEGSSLVA 212
+ K+C A+ S +L++Y C A P M +YC CTR +S+ + S +A
Sbjct: 1610 SVKYCECARNVSQVLQVYAQ---CQSSIASVPAMSVKYCECTRNVSQVLRVCAQCQSSIA 1666
Query: 213 S 215
S
Sbjct: 1667 S 1667
>SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 889
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 7 SHPPMCTTVICVL--LSGAEPRRGAPYCGYTH 96
S P C + + + SGA RR PYC YT+
Sbjct: 534 SRPGQCKSRLLAIDCRSGAASRRPFPYCAYTY 565
>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
Length = 2110
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 226 GGAEDATRELPSIARDLGLDIVLVQEQYSMVGFLAQCGAHPKAGVYIRN 80
G D + P + LG+DIV+ Q+ Y L + HP AG + N
Sbjct: 1069 GKIVDIEKLTPLLKSGLGIDIVVPQKVYRSAEKLEREKTHPLAGDLLIN 1117
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 42 AAKWCRTAQG-STLLRIYTPALGCAPHWARNPTMEYCSCTRTISRPRSRAMEGSSLVAS 215
+ K+C + S +LR+Y R +++YC C R +S+ + S +AS
Sbjct: 2 SVKYCECVRNVSQVLRVYPQGQSSIAS-VRTMSVKYCECARNVSQVLRVCAQCQSSIAS 59
>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1741
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 123 ARNPTMEYCSCTRTISRPRSRAMEGSSLVASSAPPRLIWPIRS 251
A +P +CT +IS R + GS++V APP + P+R+
Sbjct: 1160 ATSPGHVLFTCTPSISGDR-HVLNGSAVVHVKAPPVVSLPVRN 1201
>SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 26.6 bits (56), Expect = 4.5
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +3
Query: 48 KWCRTAQ-GSTLLRIYTPALGCAPHWA--RNPT-MEYCSCTRTISRPRSRAMEGSS 203
K R+ Q G+ + R +T GC PHW +P EY T ++ G+S
Sbjct: 426 KLYRSGQDGAAIDRAFTDETGCDPHWLPDDHPAYQEYTEATHSMGGCEDSVFGGAS 481
>SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2195
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 18 NVHYRYMCAAKWCRTAQGSTLLRIYTPALGCAPHWARNPTMEYCSCTRTISR 173
N Y C A A G L+R ++ A+ AP W +P ++ T T++R
Sbjct: 116 NSRYAQSCVAVDGSIAPGGALIRSHSLAVVIAPIW--DPVLKNKDVTCTLAR 165
>SB_22536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 26.2 bits (55), Expect = 5.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 185 TGSRPGYCSCTGTIFHGRV 129
TG PG C+ G+ +HG V
Sbjct: 206 TGGNPGECNSAGSSYHGGV 224
>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +2
Query: 206 RRILCTT---QIDLANTKSGPNIHTRPDLXSAPPHA 304
R I TT Q+ ++ + SGP+I ++P APP A
Sbjct: 135 RHIAMTTRKAQVQVSASSSGPSIASQPPQPPAPPAA 170
>SB_26709| Best HMM Match : CtnDOT_TraJ (HMM E-Value=8.8)
Length = 291
Score = 26.2 bits (55), Expect = 5.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 185 TGSRPGYCSCTGTIFHGRV 129
TG PG C+ G+ +HG V
Sbjct: 157 TGGNPGECNSAGSSYHGGV 175
>SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 195 GSSLVASSAPPRLIWPIRSRG 257
GS + SSAPP WP R +G
Sbjct: 307 GSDSLFSSAPPSSSWPDREQG 327
>SB_7580| Best HMM Match : Topoisom_bac (HMM E-Value=0)
Length = 856
Score = 25.8 bits (54), Expect = 7.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 76 PYCGYTHPPWGVLHIGLG 129
PYC Y+HPP+ + G+G
Sbjct: 687 PYC-YSHPPFPTMRKGMG 703
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,539,445
Number of Sequences: 59808
Number of extensions: 336269
Number of successful extensions: 737
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 425519554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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