Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31243
(320 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g07030.1 68418.m00796 aspartyl protease family protein contai... 31 0.13
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 28 1.6
At4g24000.1 68417.m03449 cellulose synthase family protein simil... 27 2.1
At4g35240.1 68417.m05009 expressed protein contains Pfam domains... 27 2.8
At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger) fa... 27 2.8
At4g17780.1 68417.m02653 F-box family protein contains F-box dom... 27 3.7
At3g23940.1 68416.m03007 dehydratase family contains Pfam profil... 27 3.7
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 27 3.7
At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit, ... 27 3.7
At1g05630.1 68414.m00584 endonuclease/exonuclease/phosphatase fa... 27 3.7
At4g39350.1 68417.m05570 cellulose synthase, catalytic subunit (... 26 4.9
At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit (... 26 4.9
At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit (... 26 6.5
At3g13670.1 68416.m01722 protein kinase family protein contains ... 26 6.5
At1g05200.1 68414.m00524 glutamate receptor family protein (GLR3... 26 6.5
At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit (... 25 8.6
>At5g07030.1 68418.m00796 aspartyl protease family protein contains
Pfam profile:PF00026 eukaryotic aspartyl protease
Length = 439
Score = 31.5 bits (68), Expect = 0.13
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +3
Query: 66 QGSTLLRIYTPALGCAPHWARNPTMEYCSCTRTISRPRSRAMEGSSLVASSAPPRLIWPI 245
QGSTL RI+ C+P + +P +T+++ ++R SSLVA R + PI
Sbjct: 33 QGSTL-RIFHIDSPCSPFKSSSPLSWEARVLQTLAQDQARLQYLSSLVAG----RSVVPI 87
Query: 246 RS-RGLISILDLIXEALLRMPAR 311
S R ++ I +AL+ PA+
Sbjct: 88 ASGRQMLQSTTYIVKALIGTPAQ 110
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase
family protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = -2
Query: 253 RLRIGQINLG---GAEDATRE-LPSIARDLGLDIVLVQEQYSMVGFLAQCGAHPKAG 95
R+ G N+G + DA L S+A D+G+ +V +QE GFLA A G
Sbjct: 577 RILTGSWNVGQGKASHDALMSWLGSVASDVGILVVGLQEVEMGAGFLAMSAAKESVG 633
>At4g24000.1 68417.m03449 cellulose synthase family protein similar
to cellulose synthase from Gossypium hirsutum
[gi:1706956], cellulose synthase-5 from Zea mays
[gi:9622882]
Length = 722
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 203 GATLHCTGSRPGYCSCTGTIFHGRVP 126
G LHC G R +CS T F+G P
Sbjct: 441 GFMLHCEGWRSIFCSPTKAAFYGDSP 466
>At4g35240.1 68417.m05009 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 828
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -2
Query: 226 GGAEDATRELPSIARDLGLDIVLVQEQYSMVGFLAQCGAHP 104
GG R +P +A+++ V E S + L + G HP
Sbjct: 412 GGGGGGPRAVPEVAKEIENQFVKAAESGSEIAKLLEVGKHP 452
>At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 199
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = -1
Query: 224 WCRGCDEGATLHCTGSRPGYCSCTGTIFHGRV 129
WC C G L G R G C G F R+
Sbjct: 11 WCHTCRRGIHLQGEGRREGACIYCGNTFLERL 42
>At4g17780.1 68417.m02653 F-box family protein contains F-box domain
Pfam:PF00646
Length = 347
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 230 SGWCRGCDEGATLHCTGSRPGYCSCTGTI 144
S C+G +E LHC ++P + +C G +
Sbjct: 80 SSQCKGNEEIVYLHCNAAQPSF-TCDGLV 107
>At3g23940.1 68416.m03007 dehydratase family contains Pfam profile:
PF00920 dehydratase family
Length = 608
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -2
Query: 229 LGGAEDATRELPSIARDLGLDIVL--VQEQYSMVGFLA 122
LGG+ +A L +IAR +GL++ L Q+ V FLA
Sbjct: 318 LGGSTNAVLHLIAIARSVGLELTLDDFQKVSDAVPFLA 355
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 182 GSRPGYCSCTGTIFHGRVPSPMWSTPQG-GCVYPQ*G 75
G PGY G+ + GRV S + PQ G YP G
Sbjct: 206 GGFPGYGGSGGSGYEGRVDSNRYMQPQNTGSGYPPYG 242
>At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit,
putative similar to gi:2827141 cellulose synthase
catalytic subunit, Arabidopsis thaliana (Ath-A)
Length = 1088
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Frame = -1
Query: 275 VEYGY*APTSYWPNQSGWCRGCDE-----GATLHCTGSRPGYCSCTGTIFHGRVP 126
+ GY T W + GW G G +HC G R YC F G P
Sbjct: 764 ISCGYEEKTE-WGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRAAFKGSAP 817
>At1g05630.1 68414.m00584 endonuclease/exonuclease/phosphatase
family protein similar to inositol 1,4,5-trisphosphate
5-phosphatase (GI:4688596) [Arabidopsis thaliana]
Length = 861
Score = 26.6 bits (56), Expect = 3.7
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = -2
Query: 253 RLRIGQINLG---GAEDATRE-LPSIARDLGLDIVLVQEQYSMVGFLAQCGAHPKAGV 92
R+ IG N+G + DA L S+ D+G+ V +QE GFLA A G+
Sbjct: 572 RILIGTWNVGQGRASHDALMSWLGSVTSDVGIVAVGLQEVEMGAGFLAMSAAKETVGL 629
>At4g39350.1 68417.m05570 cellulose synthase, catalytic subunit
(Ath-A) identical to gi:2827141
Length = 1084
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Frame = -1
Query: 275 VEYGY*APTSYWPNQSGWCRGCDE-----GATLHCTGSRPGYCSCTGTIFHGRVP 126
+ GY T W + GW G G +HC G R YC F G P
Sbjct: 760 ISCGYEDKTE-WGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRAAFKGSAP 813
>At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit
(IRX1) nearly identical to gi:12836997
Length = 985
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Frame = -1
Query: 275 VEYGY*APTSYWPNQSGWCRGCDE-----GATLHCTGSRPGYCSCTGTIFHGRVP 126
+ GY T W + GW G G +HC G R YC F G P
Sbjct: 659 ISCGYEEKTE-WGKEIGWIYGSITEDILTGFKMHCRGWRSIYCMPLRPAFKGSAP 712
>At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit
(IRX3) identical to gi:5230423
Length = 1026
Score = 25.8 bits (54), Expect = 6.5
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Frame = -1
Query: 275 VEYGY*APTSYWPNQSGWCRGCDE-----GATLHCTGSRPGYCSCTGTIFHGRVP 126
+ GY T W + GW G G +HC G R YC F G P
Sbjct: 702 ISCGYEDKTE-WGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGSAP 755
>At3g13670.1 68416.m01722 protein kinase family protein contains
Pfam domains, PF00069: Protein kinase domain
Length = 703
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -3
Query: 189 LHGISAWILFLYRNNIPWSGS*PNVEHTPRRVCISAIGCSPARFC 55
L ++ ++FL+R +PW G ++ VC + SP C
Sbjct: 338 LESLAYTLIFLHRGRLPWQGY--QGDNKSFLVCKKKMATSPDMLC 380
>At1g05200.1 68414.m00524 glutamate receptor family protein (GLR3.4)
plant glutamate receptor family, PMID:11379626
Length = 959
Score = 25.8 bits (54), Expect = 6.5
Identities = 22/65 (33%), Positives = 26/65 (40%)
Frame = -1
Query: 245 YWPNQSGWCRGCDEGATLHCTGSRPGYCSCTGTIFHGRVPSPMWSTPQGGCVYPQ*GAPL 66
YW N SG E TL+ SRP S G + + P G V+P G PL
Sbjct: 440 YWSNHSGLSVVHPE--TLY---SRPPNTSTANQRLKGIIYPGEVTKPPRGWVFPNNGKPL 494
Query: 65 RGSAP 51
R P
Sbjct: 495 RIGVP 499
>At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit
(IRX5) nearly identical to cellulose synthase
[Arabidopsis thaliana] GI:27462651; contains Pfam
profile PF03552: Cellulose synthase
Length = 1049
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Frame = -1
Query: 275 VEYGY*APTSYWPNQSGWCRGCDE-----GATLHCTGSRPGYCSCTGTIFHGRVP 126
+ GY T W + GW G G +HC G + YC F G P
Sbjct: 724 ISCGYEEKTE-WGKEIGWIYGSVTEDILTGFRMHCRGWKSVYCMPKRPAFKGSAP 777
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,172,057
Number of Sequences: 28952
Number of extensions: 221527
Number of successful extensions: 599
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 350523880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -