Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31239
(510 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 31 0.73
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21) 29 2.2
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06) 29 2.2
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077) 29 2.9
SB_46138| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05) 28 3.9
SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23) 28 3.9
SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024) 28 5.1
>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 1021
Score = 30.7 bits (66), Expect = 0.73
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +2
Query: 101 YNRVYSTVSPFVYKPGR---YVADPGRYDPSRDNSGRYIP 211
YNR+ + P++ +PGR Y PGR DP GR P
Sbjct: 670 YNRLQARDDPYIKQPGRDDPYNKQPGRDDPYIKQPGRDDP 709
>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 29.5 bits (63), Expect = 1.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 414 HPHTLPARWSHPHTLPARWSH 476
HP+ A W HP+ A W+H
Sbjct: 218 HPNKTQANWYHPNKTQANWNH 238
Score = 28.3 bits (60), Expect = 3.9
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 414 HPHTLPARWSHPHTLPARWSH 476
HP A W+HP A W+H
Sbjct: 178 HPTKTQANWNHPSKTRANWNH 198
Score = 28.3 bits (60), Expect = 3.9
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 414 HPHTLPARWSHPHTLPARWSH 476
HP+ A W+HP A W H
Sbjct: 228 HPNKTQANWNHPTKTQANWYH 248
Score = 27.9 bits (59), Expect = 5.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 414 HPHTLPARWSHPHTLPARWSH 476
HP A W+HP A W+H
Sbjct: 78 HPTKTHANWNHPSKTRANWNH 98
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +3
Query: 414 HPHTLPARWSHPHTLPARWSH 476
HP A W HP A W+H
Sbjct: 528 HPTKTQANWCHPTKTQANWNH 548
>SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = -2
Query: 221 QSCRECNGQSC----RGWGHNGLDQ-LHSGLAYRRMEKQ*SKLGCTGKECTFPVSAASAT 57
+S + Q C RGW NG + L+SG R+E L ++C P+ S
Sbjct: 587 KSLKHVKSQKCVHPKRGWPGNGRELILYSGCDEERLE-----LWFMKQDCILPLGMRSGA 641
Query: 56 VRDRQI 39
+RD QI
Sbjct: 642 IRDSQI 647
>SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)
Length = 759
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = +1
Query: 415 THIRCQQGGHT---HIRCQQGGPTQRRRLR 495
T IRC+ GG T IRC+ GG T R+R
Sbjct: 601 TSIRCRSGGGTCVTRIRCRSGGGTCVTRIR 630
>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
Length = 425
Score = 29.1 bits (62), Expect = 2.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 457 NVCGCDHLAGNVCGCDWHGNGRL 389
N GC+ GN GC++ G+ R+
Sbjct: 382 NTMGCEFQGGNTMGCEFQGDSRI 404
>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
Length = 677
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 414 HPHTLPARWSHPHTLPARWSH 476
HP A W+HP A W+H
Sbjct: 313 HPTKTQANWNHPSKTQANWNH 333
Score = 27.9 bits (59), Expect = 5.1
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 411 SHPHTLPARWSHPHTLPARWSH 476
+HP A W HP+ A W H
Sbjct: 282 NHPIKTQANWCHPNKTQANWCH 303
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +3
Query: 414 HPHTLPARWSHPHTLPARWSH 476
HP A W+HP A W H
Sbjct: 383 HPTKTQANWNHPSKTQANWYH 403
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 414 HPHTLPARWSHPHTLPARWSH 476
HP A W+HP A W+H
Sbjct: 423 HPTKTHANWNHPSKTWANWNH 443
>SB_46138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1106
Score = 28.7 bits (61), Expect = 2.9
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 62 RWPPKLGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRY--DPSRDNSGRYIPDNSGA 226
++ P+ + QY S + YKPG A+ +Y +PS++N +Y P+ S A
Sbjct: 632 QYKPEPSQANKVQYKPEPSQANKVQYKPGPSQANKVQYKPEPSQENKVQYKPEPSHA 688
>SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 279 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 368
PVL +P S PRR S +LTR PA
Sbjct: 111 PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 140
>SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -3
Query: 466 LAGNVCGCDHLAGNVCGCDWHGNGRLHDGQGNNAGSLVSITKV 338
L GN CG L GN CG +GN GN +G+ + V
Sbjct: 238 LYGNKCGTS-LYGNKCGTSLYGNKSGTSLYGNKSGNPPDVVAV 279
>SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)
Length = 304
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 279 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 368
PVL +P S PRR S +LTR PA
Sbjct: 86 PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 115
>SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)
Length = 877
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = -3
Query: 451 CG-CD---HLAGNVCGCDWHGNGRL-HDGQGN 371
CG CD AG V CDW G+G L D +GN
Sbjct: 667 CGPCDVAVDSAGRVIACDWSGDGVLVFDSRGN 698
>SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 412 HTHIRCQQGGHTHIRCQQGGPTQRRRLRL-QIRH 510
HTHIR HTHIR TQ +RL I+H
Sbjct: 150 HTHIRLHSTQHTHIRLHL---TQHSHIRLPSIQH 180
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 412 HTHIRCQQGGHTHIRCQQGGPTQRRRLRL 498
HTHIR HTHIR TQ +RL
Sbjct: 210 HTHIRLPSTQHTHIRLPS---TQHSHIRL 235
>SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)
Length = 180
Score = 27.9 bits (59), Expect = 5.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 414 HPHTLPARWSHPHTLPARWSH 476
HP A W+HP A W+H
Sbjct: 158 HPTKTHANWNHPSKTRANWNH 178
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,324,065
Number of Sequences: 59808
Number of extensions: 263129
Number of successful extensions: 855
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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