Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31239
         (510 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19200.1 68417.m02833 proline-rich family protein contains pr...    28   4.2  
At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containi...    27   7.3  
At1g26250.1 68414.m03202 proline-rich extensin, putative similar...    27   7.3  
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s...    27   9.7  

>At4g19200.1 68417.m02833 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 179

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
 Frame = +2

Query: 65  WPPKLGKYTPFQY--NRVYSTVS---PFVYKPGRYVADPGRYDPS 184
           +PP  G Y P  Y   + Y       P  Y PG Y A PG Y P+
Sbjct: 25  YPPAQGGYPPQGYPPQQGYPPAGGYPPAGYPPGAYPAAPGGYPPA 69


>At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 839

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = -3

Query: 469 HLAGNVCGCDHLAGNVCGCDWHGNGRLHDGQGNNAGSLVSITKVFAEVL 323
           H  G  CG  H  G   GC   G G    G G + G + S   V A  L
Sbjct: 781 HHGGGGCGGGHHGGGGGGCGGCGGGGC--GGGGDGGGMTSRAVVAASTL 827


>At1g26250.1 68414.m03202 proline-rich extensin, putative similar to
           extensin gi|1165322|gb|AAB53156; contains proline-rich
           extensin domains, INTERPRO:IPR002965
          Length = 443

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 68  PPKLGKYTPFQYNRVYSTV-SPFVYKPGRYV 157
           PP + K  P+ YN  YS   +P+VYKP  YV
Sbjct: 361 PPYVYKPPPYVYN--YSPPPAPYVYKPPPYV 389


>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
           similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
           [Drosophila melanogaster]
          Length = 926

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 397 HSRASHTHIRCQQGGHTHIRCQQGGPTQR 483
           ++R S+  I CQQ GH    C    P  R
Sbjct: 760 NTRQSNVCIHCQQRGHASTNCPSRVPASR 788


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,759,122
Number of Sequences: 28952
Number of extensions: 173118
Number of successful extensions: 493
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)