Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31237
         (334 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   1.5  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   2.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    20   5.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          20   5.9  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 167 YPGYPGFNGVP 135
           +PGYP F G P
Sbjct: 365 FPGYPFFGGFP 375


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 142 PLKPGYPGYPFSP 180
           PL+P  P YPF P
Sbjct: 202 PLQPFPPPYPFYP 214


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 290  LFGQKGDMGLTGEEGDKGEIGPPGETGE 207
            L+GQ   +    + G   +   PGE GE
Sbjct: 2565 LYGQSFSLADAADRGLNAKSYGPGEAGE 2592


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +3

Query: 39  LWSLL*CTLYSNITSHTWVPI 101
           +W+ L  T+  ++  H W+P+
Sbjct: 531 IWNPLTDTIPIHVWIHPWIPL 551


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,697
Number of Sequences: 336
Number of extensions: 1826
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6473381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)