Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31237
         (334 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...    28   0.43 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   1.3  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   2.3  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   2.3  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   3.0  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    24   5.3  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    24   5.3  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    23   9.2  

>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 27.9 bits (59), Expect = 0.43
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -1

Query: 259 LAKKEIREKLAHLEKLENH*LMAFMLK 179
           L+K EIREKLA + K ++  + AF L+
Sbjct: 35  LSKNEIREKLAQMYKTDSECVQAFGLR 61


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -3

Query: 119 RGDQGSDGYPGMGGDIGIQGTSQQGPKGFKGFSGE 15
           RG  G  G+ G GG  G       G  GF GF GE
Sbjct: 183 RGHNGG-GFGGFGGGSGGPPPGPGGFGGFGGFGGE 216


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -1

Query: 91   QVWEVILEYRVHHNKDQRASKDLVEKKK 8
            + ++++  Y  H+NK++R   D + KK+
Sbjct: 1075 EYYDLVDPYYFHYNKNEREESDTILKKR 1102


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = -3

Query: 170 GYPG-YPGFNGVPGRKGIRGDQGSDGYPG 87
           G P  +PG+  VP   GI G     G PG
Sbjct: 534 GMPAPFPGYPAVPAMPGIPGATAPPGAPG 562



 Score = 25.0 bits (52), Expect = 3.0
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 170 GYPGYPGFNGVPGRKGIRGDQGS 102
           GYP  P   G+PG     G  GS
Sbjct: 541 GYPAVPAMPGIPGATAPPGAPGS 563


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 146 NGVPGRKGIRGDQGSDGYPGMGGD 75
           N V G     GD+  DGYP   G+
Sbjct: 4   NEVVGSPTTNGDKNEDGYPAENGE 27


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = -3

Query: 116 GDQGSDGYPGMGGDIGIQGTSQQGPKGFKGFSG 18
           G  G D    MGG +G  G    G  G  GF G
Sbjct: 214 GAAGIDPMSLMGGGLGGAGLGGLGGAGLGGFGG 246


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +3

Query: 132 PGYTIEARVSWISFFSFSINAIN 200
           P  T+E  +  ++++SF +NA++
Sbjct: 59  PTLTVEEELELVNYYSFQLNALS 81


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 266 GLTGEEGDKGEIGPPGETGESLIDG 192
           G  G  G KG+ GP   +  S I+G
Sbjct: 44  GAKGRRGTKGKSGPANSSQTSNIEG 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,416,281
Number of Sequences: 5004
Number of extensions: 27234
Number of successful extensions: 79
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)