Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31236
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    27   0.21 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   2.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   3.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.4  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 344 KIPDWFLNRQKDIVDGKYSQLTSSNLDSKLRED-LERLKKI 463
           KI  WFL++ K+I+D  Y  L +++   +L  D L R K+I
Sbjct: 275 KIDKWFLHKMKNIID-YYLVLENTDHTKQLSHDVLLRAKQI 314


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = -1

Query: 351 GILYCLGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLEYLRPTPLI 208
           G +  +G  M+V IF ++ S+ +P+ L     A    ++ +    P++
Sbjct: 63  GFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCMSPPMV 110


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 371  QKDIVDGKYSQLTSSNLDSKLREDLERLKKIRA 469
            + D  +    QLTSS  +S  + D  +LK IRA
Sbjct: 1781 ESDESESDPDQLTSSRTESSNQLDAGKLKHIRA 1813



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 237 LEYLRPTPLIAVIANITLRL 178
           L Y+R  P +  +A  TLRL
Sbjct: 519 LPYIRLIPKVTAVAGETLRL 538


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 371  QKDIVDGKYSQLTSSNLDSKLREDLERLKKIRA 469
            + D  +    QLTSS  +S  + D  +LK IRA
Sbjct: 1777 ESDESESDPDQLTSSRTESSNQLDAGKLKHIRA 1809



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 237 LEYLRPTPLIAVIANITLRL 178
           L Y+R  P +  +A  TLRL
Sbjct: 519 LPYIRLIPKVTAVAGETLRL 538


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 351 GILYCLGFDMIVIIFSTSSSVHSPARL 271
           G +  +G  M+V IF ++ S+ +P+ L
Sbjct: 29  GFVSVMGNGMVVYIFLSTKSLRTPSNL 55


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 218 VGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITI 322
           +G+R S  V         K A   T +E+EKI T+
Sbjct: 3   LGQRISGAVAVLRGTSEVKEAQTSTSDEIEKITTV 37


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -1

Query: 345 LYCLGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIANITL 184
           + C+   MI I F+TS ++    R    +   + T+   L PT   ++ A+  L
Sbjct: 540 MLCIPGYMIYIWFTTSGTISEKFRKLIRIEDDVATLRMKLNPTKAASINADFEL 593


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -1

Query: 345 LYCLGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIANITL 184
           + C+   MI I F+TS ++    R    +   + T+   L PT   ++ A+  L
Sbjct: 593 MLCIPGYMIYIWFTTSGTISEKFRKLIRIEDNVATLRMKLNPTKAASINADFEL 646


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,780
Number of Sequences: 438
Number of extensions: 4002
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)