Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31236
(645 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C) 221 3e-58
At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) simi... 221 3e-58
At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Matc... 221 3e-58
At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast ... 32 0.28
At4g38160.2 68417.m05388 mitochondrial transcription termination... 30 1.5
At1g61710.1 68414.m06960 DC1 domain-containing protein contains ... 29 2.6
At1g33610.1 68414.m04160 leucine-rich repeat family protein cont... 29 2.6
At4g38160.1 68417.m05387 mitochondrial transcription termination... 29 3.5
At1g77750.1 68414.m09052 30S ribosomal protein S13, chloroplast,... 29 3.5
At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP... 28 4.6
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 28 4.6
>At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C)
Length = 152
Score = 221 bits (540), Expect = 3e-58
Identities = 95/135 (70%), Positives = 121/135 (89%)
Frame = +2
Query: 113 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 292
MSLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 293 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 472
E++ ++TI++NPRQ+KIPDWFLNRQKD DGKYSQ+ S+ LD KLR+DLERLKKIR H
Sbjct: 61 AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
Query: 473 RGMRHYWGLRVRGQH 517
RG+RHYWGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135
>At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) similar
to ribosomal protein S18 GI:38422 from [Homo sapiens]
Length = 152
Score = 221 bits (540), Expect = 3e-58
Identities = 95/135 (70%), Positives = 121/135 (89%)
Frame = +2
Query: 113 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 292
MSLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 293 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 472
E++ ++TI++NPRQ+KIPDWFLNRQKD DGKYSQ+ S+ LD KLR+DLERLKKIR H
Sbjct: 61 AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
Query: 473 RGMRHYWGLRVRGQH 517
RG+RHYWGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135
>At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Match
to ribosomal S18 gene mRNA gb|Z28701, DNA gb|Z23165 from
A. thaliana. ESTs gb|T21121, gb|Z17755, gb|R64776 and
gb|R30430 come from this gene
Length = 152
Score = 221 bits (540), Expect = 3e-58
Identities = 95/135 (70%), Positives = 121/135 (89%)
Frame = +2
Query: 113 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 292
MSLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 293 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 472
E++ ++TI++NPRQ+KIPDWFLNRQKD DGKYSQ+ S+ LD KLR+DLERLKKIR H
Sbjct: 61 AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
Query: 473 RGMRHYWGLRVRGQH 517
RG+RHYWGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135
>At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast
(CS13) ribosomal protein S13 precursor, chloroplast
Arabidopsis thaliana, PIR:S59594; identical to cDNA
ribosomal protein S13 GI:1515106
Length = 169
Score = 32.3 bits (70), Expect = 0.28
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +2
Query: 443 LERLKKIRAHRGMRHYWGLRVRGQ 514
++RLK+I+ +RG+RH GL RGQ
Sbjct: 122 IKRLKEIQCYRGVRHIQGLPCRGQ 145
>At4g38160.2 68417.m05388 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 363
Score = 29.9 bits (64), Expect = 1.5
Identities = 35/166 (21%), Positives = 68/166 (40%), Gaps = 1/166 (0%)
Frame = +2
Query: 23 RWRPLYN*WLPRAAGIRHEGLGTLVRNLTKMSLVIPDKFQHILRIMNTNIDGKRKVMFAM 202
R RP +L + G+ +G+ ++V N ++ + + +I+ N D ++ F
Sbjct: 186 RLRPTTE-FLKSSVGLSEDGIKSVVMNFPQLLC------RDVNKILKPNYDYLKECGFGD 238
Query: 203 TAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDI 382
+ I + Y I++K L R V+ + M Y P++F + K
Sbjct: 239 SQIATMVTGYPQILIKSVKNSLQPRIRFL----VQVMGRGMDEVASY--PEFFHHGLKKK 292
Query: 383 VDGKYSQLTSSNLDSKLREDLE-RLKKIRAHRGMRHYWGLRVRGQH 517
V+ ++ + +N+D LRE L+ KK G + G +
Sbjct: 293 VESRFKLVKKNNIDCSLREMLDCNTKKFHEKFGFSEVFNCNQNGMY 338
>At1g61710.1 68414.m06960 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 402
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 310 FFNLFFCAFASTLVKINVGFFENNVGVPPANT 215
FFNLFF A +KI +G F ++ +PP+++
Sbjct: 34 FFNLFFYAQVHENLKIELGIFSRSI-LPPSSS 64
>At1g33610.1 68414.m04160 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611
Length = 907
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +2
Query: 71 RHEGLGTLVRNLTKMSLVIPDKFQHILRIMNTNID-----GKRKVMFAMTAIKGVGRRYS 235
R E L TLV + K S V+P F +++ I N ++ G V+ ++ I+ + Y+
Sbjct: 698 RFEALSTLVLSKNKYSGVVPMSFTNLINITNLDLSHNLLTGPFPVLKSINGIESLDLSYN 757
Query: 236 NIVLK 250
LK
Sbjct: 758 KFHLK 762
>At4g38160.1 68417.m05387 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 333
Score = 28.7 bits (61), Expect = 3.5
Identities = 31/142 (21%), Positives = 62/142 (43%)
Frame = +2
Query: 23 RWRPLYN*WLPRAAGIRHEGLGTLVRNLTKMSLVIPDKFQHILRIMNTNIDGKRKVMFAM 202
R RP +L + G+ +G+ ++V N ++ + + +I+ N D ++ F
Sbjct: 186 RLRPTTE-FLKSSVGLSEDGIKSVVMNFPQLLC------RDVNKILKPNYDYLKECGFGD 238
Query: 203 TAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDI 382
+ I + Y I++K L R V+ + M Y P++F + K
Sbjct: 239 SQIATMVTGYPQILIKSVKNSLQPRIRFL----VQVMGRGMDEVASY--PEFFHHGLKKK 292
Query: 383 VDGKYSQLTSSNLDSKLREDLE 448
V+ ++ + +N+D LRE L+
Sbjct: 293 VESRFKLVKKNNIDCSLREMLD 314
>At1g77750.1 68414.m09052 30S ribosomal protein S13, chloroplast,
putative similar to putative 30S ribosomal protein S13,
chloroplast precursor GB:P42732 [Arabidopsis thaliana]
Length = 154
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 419 LDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 514
L ++ +++RL ++ +RG RH GL RGQ
Sbjct: 98 LRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQ 129
>At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative similar to UDP-galactose 4-epimerase from
Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
GI:3021357 [AJ005082]
Length = 351
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 389 GKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 484
G YS + NLD+ L+R+KK+ A G R
Sbjct: 26 GGYSVVVVDNLDNSSAVSLQRVKKLAAEHGER 57
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 28.3 bits (60), Expect = 4.6
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +3
Query: 45 SGSPGLQEFGTRVWERWLET*PKCRWSFQTNFNIFFVS*IRTS---MANARLCLR*RLSK 215
SGSP G+ E W ET + FN+F +S R + + NA + R L
Sbjct: 51 SGSPVASSGGSSAIENWSETFEWDSRADDVRFNVFGISKYRANQKEIINAIMTGRDVLVI 110
Query: 216 VLAGGTPTLFSKKPTLI 266
+ AGG +L + P ++
Sbjct: 111 MAAGGGKSLCYQLPAML 127
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,202,844
Number of Sequences: 28952
Number of extensions: 287884
Number of successful extensions: 770
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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