Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31235
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    27   1.9  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    27   2.6  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    26   4.5  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    26   5.9  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   7.9  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   7.9  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    25   7.9  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.9  

>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 559 VRRRKESRG*KPSP*PTRLKTRITMEGPISKWVTPKRTMD 678
           VR RK SR  KP+  P +L+T +  +  I++  TPK   D
Sbjct: 288 VRFRKMSRKRKPTLLPLKLQTPVPSDIEIARSQTPKNIGD 327


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 75  LEIWRIENFEPVAVPKTQFGLFYSGDS 155
           L IW I+NFE +  P +   LF+S  S
Sbjct: 561 LYIWNIKNFEAIHSPVSTLPLFHSNFS 587


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 526 KMKQSPLFKDSNVGFTCLTRTFLLPLIWKSRFSVPSLIVT 407
           K K+  +F      F   +   +LPL+++ + ++PSL VT
Sbjct: 476 KRKRKIIFIGFGEEFLTFSENLVLPLLFQIKIALPSLAVT 515


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +3

Query: 369 RYLKGGHASGFSHVTINEGTEKRLFQI---KGKRNVRVK--QVKPTFESLNNGDCFILDV 533
           RYL  GH++  S + +   +E + ++    K K  V  K   V    +  +N  C   ++
Sbjct: 496 RYLSNGHSATLSDLLLGILSEIKYYEYLVRKNKETVEEKWENVMELVQQSDNISCIFYEL 555

Query: 534 DHQIFVFV 557
           D++I   V
Sbjct: 556 DYKISTIV 563


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 157 TLY*TPQAIRTV*HGTSISGSARGPARTKPARRPSSR 267
           T+Y  P A+ T  +GT+I  +   P        P SR
Sbjct: 187 TIYGIPDALHTTQNGTTIHVTGTPPGAVSQRSEPDSR 223


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 303 VQHREVQYYESKEFLEYFSPAIRYLKGGHASG 398
           +QH E++ Y  K  LEY        K G ++G
Sbjct: 865 IQHEEMKAYRRKNDLEYIDQHFASSKSGISNG 896


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = +1

Query: 202 TSISGSARGPAR--TKPARRPSSR*TWTTNNSKDQRYSTERSNITSPRSS*NISHQPSAI 375
           TS SGS+   A   +  A +PS++ +  + NS   +     SN+ S  SS     +P+A 
Sbjct: 215 TSTSGSSSNVAAEVSNDASQPSNQDS--SLNSNIVKPPLPPSNVQSNSSSSENVPKPNAE 272

Query: 376 *KADTPQASAT*RSMREQRNDS 441
            + D P   A   S+ E  NDS
Sbjct: 273 TQEDLPTIDAHESSLYENVNDS 294


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 532 TSKMKQSPLFKDSNVGFTCLTRTFLLPLIWKSRFSVPSLI 413
           +SK+ Q   +KDS    TC T  F L L W SR  + + +
Sbjct: 756 SSKLDQFAFYKDSKQSSTC-TINFPLAL-WDSRLRIETKV 793


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,270
Number of Sequences: 5004
Number of extensions: 62184
Number of successful extensions: 204
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)