Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31234
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0155 - 32031370-32031707,32033066-32033279                       34   0.12 
12_02_0847 + 23630937-23631099,23631200-23631396,23631604-236317...    32   0.49 
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432...    31   0.85 
05_04_0158 + 18613265-18615304                                         30   2.0  
02_03_0357 + 18075171-18077240                                         29   3.4  
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481...    29   3.4  

>03_06_0155 - 32031370-32031707,32033066-32033279
          Length = 183

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +3

Query: 432 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 611
           IEE +QR EEA + +Q     + +A K    +  +    + G+   +  R K+ E L E+
Sbjct: 98  IEELKQREEEATQAQQQADVKLLEAKKLASQYQKEADKCSSGMDTCEEAREKSSEALVEQ 157

Query: 612 KKIS 623
           +K++
Sbjct: 158 RKLT 161


>12_02_0847 +
           23630937-23631099,23631200-23631396,23631604-23631738,
           23631904-23632077,23632195-23632407,23632507-23632751,
           23632890-23632930,23633200-23633238,23633552-23633565
          Length = 406

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = +3

Query: 429 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 608
           +I E+R+R +  ++   A+L+AMK+      N  ++   E     N +LE    K+QL+E
Sbjct: 41  EIAEERERFQLEQRGNDALLEAMKE-ELVAANNELEAAKEEISRKNNELE--SVKKQLQE 97

Query: 609 EK 614
            +
Sbjct: 98  SE 99


>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
            27043601-27043705,27043828-27044257,27044356-27044517,
            27044565-27045260,27045349-27046128,27046441-27046654,
            27047621-27047981,27047993-27048140,27048276-27048419,
            27048784-27048888,27049749-27049794,27050089-27050255,
            27050338-27050490,27050654-27050950,27051053-27051220,
            27051298-27051363,27051451-27051927,27052031-27052768,
            27052935-27053120
          Length = 1993

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +3

Query: 438  EKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 608
            E+ ++ ++ +    AMLQ +KD      N  +Q+K     ++  ++E  +TK Q +E
Sbjct: 1431 EEAKKFQKIKMDLLAMLQRVKDVENLNRNEKMQRKDMEEKIARQRMEIEETKRQRDE 1487


>05_04_0158 + 18613265-18615304
          Length = 679

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
 Frame = +3

Query: 435 EEKRQRLEEAEKKRQAML-----QAMKDASKTGPNFTIQKK----SENFGLSNAQLERNK 587
           +EK ++ +E E K Q  L     +AMK   KTG N  I+KK    +E     +A++ ++K
Sbjct: 608 QEKVEKNQEKEMKIQEKLGEIFDKAMKSEEKTGQNPGIEKKIQDTAEKKQEHDARVVQDK 667

Query: 588 TKEQLEEEKKI 620
            ++  +E KKI
Sbjct: 668 VEKIQDEAKKI 678


>02_03_0357 + 18075171-18077240
          Length = 689

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
 Frame = +3

Query: 528 TIQKKSENFGLSNAQLERNKT-----KEQLEEEKKISLSIRIKP 644
           +I++K +NF L+  ++ RN+T       QL EE KIS+S  + P
Sbjct: 594 SIKEKFKNFNLAFEEIYRNQTTWKVPDPQLREELKISISENVIP 637


>01_06_1656 +
           38946922-38947542,38947640-38947739,38948045-38948189,
           38948868-38948991,38949443-38949960,38950111-38950458,
           38950557-38950638,38951309-38951707,38951790-38951927,
           38952063-38952108,38952200-38952369
          Length = 896

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = +3

Query: 435 EEKRQRLEEAEKKRQAMLQ---AMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLE 605
           E+KR+  EEAE K+Q   Q   A K+  +        +K +      A+ E+ + +++  
Sbjct: 369 EQKRREKEEAEMKKQQRKQEEEAQKEQKRREKEEAETRKQQKKQQEEAEKEQKRREKEAV 428

Query: 606 EEKKISLSIRIKPLTFEGLFLDK 674
           + KK  L+I+ +    E  F +K
Sbjct: 429 QLKK-QLAIQKQASMMERFFKNK 450


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,566,804
Number of Sequences: 37544
Number of extensions: 215850
Number of successful extensions: 843
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)