Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31232
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   223   2e-59
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...   108   7e-25
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    99   5e-22
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    94   2e-20
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    89   4e-19
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    62   6e-11
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    60   2e-10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    60   3e-10
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    43   4e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    28   1.5  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    27   2.6  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   4.5  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    26   6.0  
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|...    25   7.9  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    25   7.9  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  223 bits (545), Expect = 2e-59
 Identities = 101/116 (87%), Positives = 109/116 (93%)
 Frame = +1

Query: 16  ALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITA 195
           ALFQPS LG+E+ GIHE  YNSIMKCDVDIRKDLY N VMSGGTTMYPGIADRMQKEI A
Sbjct: 260 ALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQA 319

Query: 196 LAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 363
           LAPS++K+KI+APPERKYSVWIGGSILASLSTFQQMWISK+EYDESGPGIV+RKCF
Sbjct: 320 LAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score =  108 bits (260), Expect = 7e-25
 Identities = 48/115 (41%), Positives = 78/115 (67%)
 Frame = +1

Query: 19  LFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAL 198
           LF P  +G E+ G+H  ++ SI+  D+D+R  LY+N V+SGG+T+  G  +R   E+ A+
Sbjct: 266 LFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAI 325

Query: 199 APSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 363
           +    ++KI A PER ++ W+GGSILASLSTF+++ I+ EEY ++   ++ R+ F
Sbjct: 326 SGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 99.1 bits (236), Expect = 5e-22
 Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 11/121 (9%)
 Frame = +1

Query: 7   LSRALFQPSFLGMESC---------GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYP 159
           +S  LF PSF    S          G+HE VY SI+ CD ++R  L  N V++GGT++ P
Sbjct: 298 ISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIP 357

Query: 160 GIADRMQKEITALAP-STIKIKII-APPERKYSVWIGGSILASLSTFQQMWISKEEYDES 333
           G+++R+Q E+  LA  S I +           +VW GGSILASL  FQ +W+SK+EYDE 
Sbjct: 358 GLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEV 417

Query: 334 G 336
           G
Sbjct: 418 G 418


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 93.9 bits (223), Expect = 2e-20
 Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
 Frame = +1

Query: 55  GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 234
           GI +   N I +CDVDIR  L  N ++ GGT++  G + R+Q E++ L P + ++KI A 
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384

Query: 235 P---ERKYSVWIGGSILASLSTFQQMWISKEEYDESGP---GIVHRKC 360
               ER Y+ W+GGSIL+SL TF Q+WIS++EY+E G     ++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 89.4 bits (212), Expect = 4e-19
 Identities = 48/118 (40%), Positives = 74/118 (62%), Gaps = 12/118 (10%)
 Frame = +1

Query: 19  LFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAL 198
           LFQP  +G E  G+ E ++++I   DVDIRK LY   V+SGG++MY G+  R++KEI  L
Sbjct: 261 LFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQL 320

Query: 199 --------APSTI---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 336
                    P+ +   K+KI   P R+++V+IGG++LA  ++    MW+SK E++E G
Sbjct: 321 WFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 62.5 bits (145), Expect = 6e-11
 Identities = 28/113 (24%), Positives = 59/113 (52%)
 Frame = +1

Query: 1   VPLSRALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQ 180
           + +   +F PS +G++  GI E + + + +  ++ ++ L +N +++GG    PG+  R++
Sbjct: 596 IRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIK 655

Query: 181 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 339
           +E+T++ P    I +          W G S  +    F+   +++EEY E GP
Sbjct: 656 RELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 14/111 (12%)
 Frame = +1

Query: 64  ETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTI---------- 213
           E V N +    +D+RK LY N V+SGG+T++    +R+Q+++  +    I          
Sbjct: 309 ELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAK 368

Query: 214 ----KIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 354
                + +I+   ++ +VW GGS+LA    F     +K +Y+E G  I  R
Sbjct: 369 SGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 35/113 (30%), Positives = 54/113 (47%)
 Frame = +1

Query: 19  LFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAL 198
           LF PS + +   GI E V  S+     +I+  L  N V  GG   +PG   R+  E+ +L
Sbjct: 287 LFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSL 346

Query: 199 APSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 357
           AP+  ++K+  P +     W   S +  L  +    I++ EY E G  I+ RK
Sbjct: 347 APANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
 Frame = +1

Query: 109 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 279
           K+LY++ ++ GG   +PG A  +++ I +   +   I +I PP   + ++  W G  I  
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586

Query: 280 SLSTFQQMWISKEEYDESGPGIVHRK 357
            +    ++WI   ++   G  ++  K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +1

Query: 256 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 357
           ++GGSI+A  S  + +   +++ EEY + GP  +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 181 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 291
           KEI++ A S I +  + P E+    W    ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 636 RYPIPPYSESYYNSLAVVLQ 695
           RYP+PPY +    SL   LQ
Sbjct: 314 RYPLPPYCDCTSRSLVTALQ 333


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = +2

Query: 410 VRVLNATVSTLYLVIP--EN*TSNLTPSILM*FIVKFYINLISFLFLLYTRDRCGSQR-- 577
           VR  +A  S  +L  P   N  SN TP+ +   I K   N+ S  + L   D C   R  
Sbjct: 575 VRFFHAIQSHFHLEGPIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLNEDACALSRTI 634

Query: 578 -QM*LINKTGNLFIL 619
            ++ ++   G  F+L
Sbjct: 635 PKLSILPTNGQYFLL 649


>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 419 ELGRAQHHTAPGSRGRAA*KHLRWT 345
           E+ R++ H+ PGS+G A   +L WT
Sbjct: 46  EISRSETHSIPGSKGEA---NLIWT 67


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 60  PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 188
           PR+ V      R+R P  P  + R V      PR RRQ  +G+
Sbjct: 41  PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,851
Number of Sequences: 5004
Number of extensions: 50797
Number of successful extensions: 127
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)