Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31230
         (368 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   0.43 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   0.99 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   1.7  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   1.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   3.0  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   3.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    20   7.0  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    20   9.2  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    20   9.2  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 24.2 bits (50), Expect = 0.43
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 17/89 (19%)
 Frame = +3

Query: 153 NLEDIIVKPTESNSVFTDK-NGESCKCVPYYLCNKNNEGVDVNNA---SVTGWGVLDVM- 317
           N++D       +N    DK  G  CKC P ++     EG D+N       +  G LD + 
Sbjct: 260 NVDDCRPGACHNNGTCLDKVGGFECKCPPGFV-GPRCEG-DINECLSNPCSNAGTLDCVQ 317

Query: 318 ------------FGEQHCQESVEICCTNP 368
                       F  +HC+  V  C T+P
Sbjct: 318 LVNDYHCNCKLGFMGRHCESKVNFCATSP 346



 Score = 20.6 bits (41), Expect = 5.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 258 CSCYTNSRGRICKI 217
           CSC + + G IC+I
Sbjct: 246 CSCPSGTLGYICEI 259



 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 333 CQESVEICCTNP 368
           C E V+ C TNP
Sbjct: 96  CGEYVDWCSTNP 107


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 0.99
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 325 SPNMTSSTPHPVTLALLTSTPSLFLLHK**GT-HLQDSPFLSVNTLLLSVGLT 170
           +P +T ++P PV++   TST S           HL+DSP      L +S G T
Sbjct: 148 APILTKTSPTPVSINNNTSTSSSASSPSVTAAPHLRDSPNYIKPQLHVSTGST 200


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +2

Query: 119 NAPHAGEARHGEPGRHHR*AYGEQQRVYG*ERG 217
           N  H G     +  +HH+  + +Q  +YG ++G
Sbjct: 163 NNHHMGHHMQEQHPQHHQPHHQQQHMMYGGQQG 195


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +2

Query: 119 NAPHAGEARHGEPGRHHR*AYGEQQRVYG*ERG 217
           N  H G     +  +HH+  + +Q  +YG ++G
Sbjct: 165 NNHHMGHHMQEQHPQHHQPHHQQQHMMYGGQQG 197


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +3

Query: 216  ESCKCVPYYLCNK 254
            +   C  YYLCN+
Sbjct: 2245 DDTNCAQYYLCNQ 2257


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +1

Query: 193 ACLRIRTGNLANASPTIC 246
           +C+ +  G+  N++P+IC
Sbjct: 21  SCIAVGVGSGRNSAPSIC 38



 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 318 FGEQHCQESVEICCTNP 368
           F  ++C E++  C  NP
Sbjct: 60  FTGKYCHENINDCKVNP 76


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 350 LHALLAVLFAEHDIQHSPPRHAGV 279
           L  LLA++F + ++    PR  GV
Sbjct: 85  LFPLLALIFEKCELATCTPREPGV 108


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 325 SPNMTSSTPHP 293
           SP+ TSS+P P
Sbjct: 284 SPSSTSSSPEP 294


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 278 INVHPFIVLVTQIVGDAFARFPVLI 204
           +  HP+IV +   V +  A  P+L+
Sbjct: 507 VRQHPYIVSLIGCVTEGRAEGPLLV 531


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,195
Number of Sequences: 336
Number of extensions: 1508
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7616520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)