Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31230
         (368 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    24   6.5  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    24   8.6  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    24   8.6  

>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 221 RFPVLIRKHAVALRRLNDDVFQV 153
           R P L+ K    ++RLNDD  +V
Sbjct: 870 RLPALLAKKQYIIKRLNDDFQKV 892


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -1

Query: 329 LFAEHDIQHSPPRHAGVINVH 267
           +   H +   PP H+ V N+H
Sbjct: 14  ILCNHSVPSFPPFHSSVANIH 34


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 138 SPAWGAFPKMFRSKAGSKVVSWARPTVT 55
           +PAW +  K     AG+K  SW   T T
Sbjct: 890 TPAWNSGAKTPAWNAGNKTPSWNNGTKT 917


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,413,270
Number of Sequences: 5004
Number of extensions: 25575
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)