Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31230
         (368 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0435 + 22912993-22913456,22913847-22914012,22914096-229141...    28   2.6  
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975...    26   8.1  
04_04_1466 - 33799104-33799229,33799659-33799669,33800052-338002...    26   8.1  
03_06_0136 + 31933843-31934715,31934906-31935021,31935233-319354...    26   8.1  

>02_04_0435 +
           22912993-22913456,22913847-22914012,22914096-22914146,
           22914353-22914578,22915275-22915963,22916055-22916408
          Length = 649

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 144 RASP-AWGAFPKMFRSKAGSKVVSWARPTVTSTASK 40
           R SP  WG  P  FR+  GS      RPT   ++S+
Sbjct: 595 RQSPDGWGFGPDSFRTSPGSTAAQINRPTAQGSSSQ 630


>09_06_0198 -
           21496692-21496991,21497111-21497258,21497341-21497578,
           21497679-21497889,21497977-21498170,21498263-21498364,
           21498525-21499879,21501193-21501494,21501600-21501750,
           21501838-21502102,21502155-21502362,21502467-21502660,
           21502749-21502850,21503481-21503680,21504010-21504846,
           21505806-21506107,21506209-21506359,21506447-21506684,
           21506764-21506971,21507078-21507271,21507322-21507462,
           21513484-21514811,21515923-21516227,21516331-21516481,
           21516570-21516807,21516881-21517088,21517197-21517366,
           21517451-21517549,21517708-21519029,21521601-21521683
          Length = 3314

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 111 MFRSKAGSKVVSWARPTVTSTASKS 37
           M+R++AG ++VSW  P   S  S S
Sbjct: 199 MYRTRAGERLVSWKGPDDPSPGSFS 223


>04_04_1466 -
           33799104-33799229,33799659-33799669,33800052-33800200,
           33800261-33800299,33800690-33800746,33800839-33801628,
           33801705-33801980,33802051-33802117,33802211-33802285,
           33802618-33802812,33802927-33803076,33803152-33803522,
           33804070-33804193,33804246-33804275,33804306-33804417,
           33804919-33804985,33805138-33805180,33805768-33805872
          Length = 928

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -3

Query: 159 PGSPCRASPAWGAFPKMFRSKAGSKVVSWARPTVTSTASKSERIAL 22
           P  P R S   G      + K  +KVV  A+PT  S+A  S+   L
Sbjct: 447 PNEPTRVSSVKGPGLGESKPKVSAKVVVPAKPTNVSSADHSDGTGL 492


>03_06_0136 +
          31933843-31934715,31934906-31935021,31935233-31935408,
          31935846-31936036,31936119-31936205,31936304-31936461,
          31936555-31936765,31936856-31937005
          Length = 653

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 66 PTVTSTASKSERIALLLLKNSS 1
          PT T+ AS +  +ALLLL +SS
Sbjct: 6  PTATAAASTTSHLALLLLLSSS 27


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,049,301
Number of Sequences: 37544
Number of extensions: 195526
Number of successful extensions: 507
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)