Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31230
         (368 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53695| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_58558| Best HMM Match : EGF (HMM E-Value=0)                         27   6.3  
SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  

>SB_53695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 162 LPGSPCRASPAWGAFPKMFRSKAGSKVV 79
           L GSP ++ P    F KMFRSK   K +
Sbjct: 161 LTGSPLKSEPLVKLFNKMFRSKVEEKAL 188


>SB_58558| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1101

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 13/77 (16%)
 Frame = +3

Query: 177 PTESNSVFTDK-NGESCKCVPYYLCNKNNEGVDV--NNASVTGWGVLDVMFGEQ------ 329
           P ++N   TD+ NG  C C P +        VD   +N  V G    D   G        
Sbjct: 625 PCQNNGTCTDQVNGYLCDCTPGWYGKACEHDVDECSSNPCVNGGTCNDEAGGYTCTCAAG 684

Query: 330 ----HCQESVEICCTNP 368
               HC+  ++ C TNP
Sbjct: 685 YTGLHCETDIDECRTNP 701


>SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1868

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -1

Query: 365  ISAADLHALLAVLFAEHDIQHSPPRHAGVINVHPFIVLVTQIVGDAF 225
            +S+A  H   A +++   +    P ++ ++  HPF   + Q +GDA+
Sbjct: 919  LSSAGRHKSAATIWSSKCL----PIYSSIMGEHPFTATLLQYIGDAY 961


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,487,024
Number of Sequences: 59808
Number of extensions: 218915
Number of successful extensions: 815
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)