Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31230
         (368 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY393673-1|AAR02546.1|  153|Homo sapiens immunoglobulin heavy ch...    29   6.2  
M73980-1|AAA60614.1| 2444|Homo sapiens TAN1 protein.                   28   8.2  
BC054816-1|AAH54816.2|  698|Homo sapiens 5-methyltetrahydrofolat...    28   8.2  
AF308602-1|AAG33848.1| 2556|Homo sapiens NOTCH 1 protein.              28   8.2  

>AY393673-1|AAR02546.1|  153|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 153

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +3

Query: 165 IIVKPTESNSVFTDKNGESCKCVPYYLCNKNNEGVDVNNASVTGWG 302
           I+ + T +++V+ D    + +    Y C + +EG D  ++    WG
Sbjct: 65  IVTRDTSTSTVYMDMRNVTSEDRAVYYCARPDEGSDYGDSGFDQWG 110


>M73980-1|AAA60614.1| 2444|Homo sapiens TAN1 protein.
          Length = 2444

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +3

Query: 153 NLEDIIVKPTESNSVFTDKNGESCKCVPYY---LCNKN 257
           NL+D    P +S +     +G  C C P Y   +CN N
Sbjct: 641 NLDDCASSPCDSGTCLDKIDGYECACEPGYTGSMCNSN 678


>BC054816-1|AAH54816.2|  698|Homo sapiens
           5-methyltetrahydrofolate-homocysteine methyltransferase
           reductase protein.
          Length = 698

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 129 WGAFPKMFRSKAGSKVVSWARPTVTSTASKSERIALLLL 13
           W A  K FRS  G + +S A P  +  +S+++ +   LL
Sbjct: 147 WPALRKHFRSSRGQEEISGALPVASPASSRTDLVKSELL 185


>AF308602-1|AAG33848.1| 2556|Homo sapiens NOTCH 1 protein.
          Length = 2556

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +3

Query: 153 NLEDIIVKPTESNSVFTDKNGESCKCVPYY---LCNKN 257
           NL+D    P +S +     +G  C C P Y   +CN N
Sbjct: 641 NLDDCASSPCDSGTCLDKIDGYECACEPGYTGSMCNSN 678


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,432,504
Number of Sequences: 237096
Number of extensions: 1083812
Number of successful extensions: 2702
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2702
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2363825726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)