Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31230
         (368 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53141-2|AAA96104.2|  491|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U42437-2|AAW88401.1|  294|Caenorhabditis elegans Hypothetical pr...    26   9.7  

>U53141-2|AAA96104.2|  491|Caenorhabditis elegans Hypothetical
           protein C14C11.4 protein.
          Length = 491

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 328 CSPNMTSSTPHPVTLALLTSTP 263
           C   + S TP PV+  LLT TP
Sbjct: 301 CEMRIISGTPSPVSRRLLTYTP 322


>U42437-2|AAW88401.1|  294|Caenorhabditis elegans Hypothetical
           protein F30B5.8 protein.
          Length = 294

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 337 WQCCSPNMTSSTPHPVT-LALLTSTPSLF 254
           W+CCS N ++ T    T +ALL S   +F
Sbjct: 197 WKCCSKNQSAHTFSKATQIALLDSAVVIF 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,095,968
Number of Sequences: 27780
Number of extensions: 153602
Number of successful extensions: 469
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)