Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31230
         (368 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38140.1 68417.m05385 zinc finger (C3HC4-type RING finger) fa...    33   0.059
At4g11440.1 68417.m01842 mitochondrial substrate carrier family ...    28   1.7  
At1g43900.1 68414.m05065 protein phosphatase 2C, putative / PP2C...    28   2.2  
At1g70580.2 68414.m08128 glutamate:glyoxylate aminotransferase 2...    27   3.9  
At1g70580.1 68414.m08127 glutamate:glyoxylate aminotransferase 2...    27   3.9  
At3g27550.1 68416.m03443 group II intron splicing factor CRS1-re...    26   6.8  
At5g61450.1 68418.m07710 2-phosphoglycerate kinase-related conta...    26   9.0  
At5g60160.1 68418.m07542 aspartyl aminopeptidase, putative simil...    26   9.0  

>At4g38140.1 68417.m05385 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 145

 Score = 33.1 bits (72), Expect = 0.059
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 219 SCKCVPYYLCNKNNEGVDVNNASVTGWGVLDVMFGEQHCQESVEICC 359
           +C C+P     KN    D ++    G+ ++ VMFG++  +E  EICC
Sbjct: 20  TCVCIPLGRLKKNGGDADAHDDD--GYNLVGVMFGDKEKEE--EICC 62


>At4g11440.1 68417.m01842 mitochondrial substrate carrier family
           protein 
          Length = 550

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 153 NLEDIIVKPTESNSVFTDKNGESCKCV 233
           N E  I+ P  S      +NG+ C CV
Sbjct: 184 NFEGCILNPVSSKEELASRNGDGCDCV 210


>At1g43900.1 68414.m05065 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase type 2C
           GI:4336436 from [Lotus japonicus]
          Length = 371

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 337 WQCCSPNMTSSTPHPVTLALL 275
           W C SPN+T+ +P P+++A L
Sbjct: 54  WFCQSPNLTNPSPPPLSVAPL 74


>At1g70580.2 68414.m08128 glutamate:glyoxylate aminotransferase 2
           (GGT2) identical to glutamate:glyoxylate
           aminotransferase 2 [Arabidopsis thaliana] GI:24461829;
           similar to alanine aminotransferase from Panicum
           miliaceum [SP|P34106], GI:4730884 from Oryza sativa;
           contains Pfam profile PF00155: aminotransferase, classes
           I and II
          Length = 481

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 231 VPYYLCNKNNEGVDVNN 281
           VPYYL    N G+DVNN
Sbjct: 180 VPYYLEESENWGLDVNN 196


>At1g70580.1 68414.m08127 glutamate:glyoxylate aminotransferase 2
           (GGT2) identical to glutamate:glyoxylate
           aminotransferase 2 [Arabidopsis thaliana] GI:24461829;
           similar to alanine aminotransferase from Panicum
           miliaceum [SP|P34106], GI:4730884 from Oryza sativa;
           contains Pfam profile PF00155: aminotransferase, classes
           I and II
          Length = 481

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 231 VPYYLCNKNNEGVDVNN 281
           VPYYL    N G+DVNN
Sbjct: 180 VPYYLEESENWGLDVNN 196


>At3g27550.1 68416.m03443 group II intron splicing factor
           CRS1-related contains weak similarity to CRS1 [Zea mays]
           gi|9837550|gb|AAG00595
          Length = 491

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +3

Query: 177 PTESNSVFTDKNGESCKCVPYYLCNKNNEGVDVNNASVTGWGVLDVMFGEQHCQESVEIC 356
           P     +FT +  ++ K + +    KN   V V    V G GV+  M       E+V++C
Sbjct: 85  PVHDPELFTSEQVQAFKKIGF----KNKNYVPVGVRGVFG-GVVQNMHMHWKFHETVQVC 139

Query: 357 CTN 365
           C N
Sbjct: 140 CDN 142


>At5g61450.1 68418.m07710 2-phosphoglycerate kinase-related contains
           weak similarity to 2-phosphoglycerate kinase (GI:467751)
           [Methanothermus fervidus]
          Length = 447

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 225 KCVPYYLCNKNNEGVDVNNASVT 293
           K +  YLC+ N++GV V N S T
Sbjct: 395 KTIEDYLCSFNSQGVTVVNISAT 417


>At5g60160.1 68418.m07542 aspartyl aminopeptidase, putative similar
           to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
           {Homo sapiens}; contains Pfam profile PF02127:
           Aminopeptidase I zinc metalloprotease (M18)
          Length = 477

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 365 ISAADLHALLAVLFAEHDIQHSPPRHAGVINVH 267
           +SA   HAL      +H+  H P  H G++  H
Sbjct: 344 VSADMAHALHPNFMDKHEENHQPKMHGGLVIKH 376


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,704,802
Number of Sequences: 28952
Number of extensions: 144399
Number of successful extensions: 393
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)