Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31229
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    26   4.9  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   6.4  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   8.5  

>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 19  SRMNAKPVPASRNCLENETLKIPKSGFASEDDQ 117
           S  + KP+PAS +   + +L++P SG +   D+
Sbjct: 81  SPSSRKPLPASPSRTRDHSLRVPVSGHSYSADE 113


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +3

Query: 273 WWILGKWKASFVVASLRRLDGFATLQWAANESKIKSSYT 389
           +W    W A   +A  +  DG     + A +  I  SYT
Sbjct: 408 FWCSASWLAGISLAKKKNFDGLENASYDATKPIIPVSYT 446


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 339  ATLQWAANESKIKSSYTDVLSVRSHDR 419
            A L W A   KI+S    +LS+ SH +
Sbjct: 1176 AVLYWFATLHKIRSFLVHLLSINSHGK 1202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,170,057
Number of Sequences: 5004
Number of extensions: 39388
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)